Ole Lund
Danmarks Tekniske Universitet
H-index: 93
Europe-Denmark
Top articles of Ole Lund
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Deep integrative models for large-scale human genomics | Nucleic Acids Research | Arnór I Sigurdsson Ioannis Louloudis Karina Banasik David Westergaard Ole Winther | 2023/5/24 |
MAGinator enables strain-level quantification of de novo MAGs | bioRxiv | Trine Zachariasen Jakob Russel Charisse Petersen Gisle Alberg Vestergaard Shiraz Shah | 2023 |
Improved prediction of blood biomarkers using deep learning | medRxiv | Arnór I Sigurdsson Kirstine Ravn Ole Winther Ole Lund Søren Brunak | 2022/11/1 |
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study | The Lancet Microbe | Victoria A Janes Sébastien Matamoros Patrick Munk Philip TLC Clausen Sylvie M Koekkoek | 2022/8/1 |
PlasmidHostFinder: prediction of plasmid hosts using random forest | Msystems | Derya Aytan-Aktug Philip TLC Clausen Judit Szarvas Patrick Munk Saria Otani | 2022/4/26 |
SourceFinder: A machine-learning-based tool for identification of chromosomal, plasmid, and bacteriophage sequences from assemblies | Microbiology Spectrum | Derya Aytan-Aktug Vladislav Grigorjev Judit Szarvas Philip TLC Clausen Patrick Munk | 2022/12/21 |
Rapid open-source snp-based clustering offers an alternative to core genome mlst for outbreak tracing in a hospital setting | Frontiers in Microbiology | Judit Szarvas Mette Damkjaer Bartels Henrik Westh Ole Lund | 2021/4/1 |
Machine learning predicts and provides insights into milk acidification rates of Lactococcus lactis | Plos one | Signe Tang Karlsen Tammi Camilla Vesth Gunnar Oregaard Vera Kuzina Poulsen Ole Lund | 2021/3/15 |
Automated download and clean-up of family-specific databases for kmer-based virus identification | Bioinformatics | Rosa L Allesøe Camilla K Lemvigh My VT Phan Philip TLC Clausen Alfred F Florensa | 2021/3/1 |
Machine learning of antimicrobial resistance | Derya Aytan-Aktug | 2021 | |
Identification of single-nucleotide polymorphisms in the mitochondrial genome and Kelch 13 gene of Plasmodium falciparum in different geographical populations | Innate immunity | Eva C Guinan Christine D Palmer Christy J Mancuso Lisa Brennan Liat Stoler-Barak | 2013/10/9 |
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads | Biology Methods and Protocols | Malte B Hallgren Søren Overballe-Petersen Ole Lund Henrik Hasman Philip TLC Clausen | 2021 |
Predicting antimicrobial resistance using partial genome alignments | Msystems | Derya Aytan-Aktug M Nguyen Philip Thomas Lanken Conradsen Clausen RL Stevens Frank Møller Aarestrup | 2021/6/29 |
Metagenomic Approaches for Determining Low-Abundance Genomic Entities in Microbiomes | Philipp Kirstahler | 2020 | |
An interactive database for the investigation of high-density peptide microarray guided interaction patterns and antivenom cross-reactivity | PLoS Neglected Tropical Diseases | Kamille E Krause Timothy P Jenkins Carina Skaarup Mikael Engmark Nicholas R Casewell | 2020/6/24 |
AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides | Scientific Reports | Tobias Hegelund Olsen Betül Yesiltas Frederikke Isa Marin Margarita Pertseva Pedro J García-Moreno | 2020/12/8 |
MINTyper: A method for generating phylogenetic distance matrices with long read sequencing data | bioRxiv | Malte B Hallgren Søren Overballe-Petersen Henrik Hasman Ole Lund Philip TLC Clausen | 2020/1/1 |
Accelerating surveillance and research of antimicrobial resistance–an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences | Microbial genomics | Sébastien Matamoros Rene S Hendriksen Bálint Ármin Pataki Nima Pakseresht Marc Rossello | 2020/5 |
ResFinder 4.0 for predictions of phenotypes from genotypes | Journal of Antimicrobial Chemotherapy | Valeria Bortolaia Rolf S Kaas Etienne Ruppe Marilyn C Roberts Stefan Schwarz | 2020/12 |
Large scale automated phylogenomic analysis of bacterial isolates and the evergreen online platform | Communications biology | Judit Szarvas Johanne Ahrenfeldt Jose Luis Bellod Cisneros Martin Christen Frølund Thomsen Frank M Aarestrup | 2020/3/20 |
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