Frank Aarestrup
Danmarks Tekniske Universitet
H-index: 124
Europe-Denmark
Top articles of Frank Aarestrup
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment | Animal Microbiome | Daniel Scicchitano Daniela Leuzzi Giulia Babbi Giorgia Palladino Silvia Turroni | 2024/3/30 |
Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis | Microbiology Spectrum | Alix Vincent Thorn Frank M Aarestrup Patrick Munk | 2024/1/11 |
VirulenceFinder for Enterococcus faecium and Enterococcus lactis: an enhanced database for detection of putative virulence markers by using whole-genome … | Microbiology Spectrum | Louise Roer Hülya Kaya Ana P Tedim Carla Novais Teresa M Coque | 2024/2/8 |
Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024 | Eurosurveillance | Leandre Murhula Masirika Jean Claude Udahemuka Leonard Schuele Pacifique Ndishimye Saria Otani | 2024/3/14 |
The first complete genome sequence of Staphylococcus aureus ST5477 | Microbiology Resource Announcements | Pimlapas Leekitcharoenphon Saria Otani Judit Szarvas Tutu Mzee Happiness Kumburu | 2024/1/5 |
SpanSeq: Similarity-based sequence data splitting method for improved development and assessment of deep learning projects | arXiv preprint arXiv:2402.14482 | Alfred Ferrer Florensa Jose Juan Almagro Armenteros Henrik Nielsen Frank Møller Aarestrup Philip Thomas Lanken Conradsen Clausen | 2024/2/22 |
Predicting Listeria monocytogenes virulence potential using whole genome sequencing and machine learning | International Journal of Food Microbiology | Alexander Gmeiner Patrick Murigu Kamau Njage Lisbeth Truelstrup Hansen Frank M Aarestrup Pimlapas Leekitcharoenphon | 2024/1/30 |
West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers | PLoS Pathogens | Lu Lu Feifei Zhang Bas B Oude Munnink Emmanuelle Munger Reina S Sikkema | 2024/1/25 |
ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets | Bioinformatics | Hannah-Marie Martiny Nikiforos Pyrounakis Thomas N Petersen Oksana Lukjančenko Frank M Aarestrup | 2024/2/20 |
The European livestock resistome | Msystems | Patrick Munk Dongsheng Yang Timo Röder Leonie Maier Thomas Nordahl Petersen | 2024/4/16 |
Transmission of antimicrobial resistance in the gut microbiome of gregarious cockroaches: the importance of interaction between antibiotic exposed and non-exposed populations | Msystems | Amalia Bogri Emilie Egholm Bruun Jensen Asbjørn Vedel Borchert Christian Brinch Saria Otani | 2024/1/23 |
Routes of dispersion of antibiotic resistance genes from the poultry farm system | Science of the Total Environment | Daniel Scicchitano Giulia Babbi Giorgia Palladino Silvia Turroni Yitagele Terefe Mekonnen | 2024/2/20 |
Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand | Microbiology Spectrum | Jirachaya Toyting Narong Nuanmuang Fuangfa Utrarachkij Neunghatai Supha Yuwanda Thongpanich | 2024/4/2 |
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses | Microbial Genomics | Nadim Rahman Colman O'Cathail Ahmad Zyoud Alexey Sokolov Bas Oude Munnink | 2024/2/15 |
Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report | Heliyon | Happiness H Kumburu Mariana Shayo Marco van Zwetslaar Judith Njau Davis J Kuchaka | 2023/7/1 |
An Overview of Antimicrobial Resistance Profiles of Publicly Available Salmonella Genomes with Sufficient Quality and Metadata | Narong Nuanmuang Pimlapas Leekitcharoenphon Patrick Murigu Kamau Njage Alexander Gmeiner Frank M Aarestrup | 2023/9/1 | |
Modelling the effectiveness of surveillance based on metagenomics in detecting, monitoring, and forecasting antimicrobial resistance in livestock production under economic … | Scientific Reports | Ofosuhene O Apenteng Frank M Aarestrup Håkan Vigre | 2023/11/21 |
Hot Spots In Arctic Soils: Are Ancient Arctic Settlements Possible Reservoirs For Pathogenic Agents? | Lorrie Maccario Judit Szarvas Saria Otani Louise Mørch Mortensen Bo Elberling | 2023 | |
Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome | PloS One | Line Jensen Ostenfeld Patrick Munk Frank M Aarestrup Saria Otani | 2023/3/30 |
Highly drug resistant clone of Salmonella Kentucky ST198 in clinical infections and poultry in Zimbabwe | npj Antimicrobials and Resistance | Tapfumanei Mashe Gaetan Thilliez Blessmore V Chaibva Pimlapas Leekitcharoenphon Matt Bawn | 2023/6/16 |
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