Morten Nielsen
Danmarks Tekniske Universitet
H-index: 85
Europe-Denmark
Top articles of Morten Nielsen
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes | NAR cancer | Yat-tsai Richie Wan Zeynep Koşaloğlu‐Yalçın Bjoern Peters Morten Nielsen | 2024/3/1 |
The journey towards complete and accurate prediction of HLA antigen presentation | ImmunoInformatics | Jonas Birkelund Nilsson Morten Nielsen | 2024/3/1 |
New light on the HLA-DR immunopeptidomic landscape | Journal of Leukocyte Biology | Emilie Egholm Bruun Jensen Birkir Reynisson Carolina Barra Morten Nielsen | 2024/1/12 |
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations | bioRxiv | Magnus Haraldson Høie Frederik Steensgaard Gade Julie Maria Johansen Charlotte Würtzen Ole Winther | 2023/2/5 |
An analysis pipeline for understanding 6-thioguanine effects on a mouse tumour genome | Cancer Immunology, Immunotherapy | Patricio Yankilevich Loulieta Nazerai Shona Caroline Willis Kjeld Schmiegelow Daniela De Zio | 2024/1/27 |
IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition | Frontiers in Immunology | Annie Borch Ibel Carri Birkir Reynisson Heli M Garcia Alvarez Kamilla K Munk | 2024/4/3 |
MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer | Nature Communications | Hanqing Liao Carolina Barra Zhicheng Zhou Xu Peng Isaac Woodhouse | 2024/1/22 |
Enhancing TCR specificity predictions by combined pan-and peptide-specific training, loss-scaling, and sequence similarity integration | Elife | Mathias Fynbo Jensen Morten Nielsen | 2024/3/4 |
Beyond MHC binding: immunogenicity prediction tools to refine neoantigen selection in cancer patients | Ibel Carri Erika Schwab Enrique Podaza Heli M Garcia Alvarez José Mordoh | 2023 | |
Machine learning reveals limited contribution of trans-only encoded variants to the HLA-DQ immunopeptidome | Communications biology | Jonas Birkelund Nilsson Saghar Kaabinejadian Hooman Yari Bjoern Peters Carolina Barra | 2023/4/21 |
Benchmarking data-driven filtering for denoising of TCRpMHC single-cell data | Scientific reports | Alessandro Montemurro Helle Rus Povlsen Leon Eyrich Jessen Morten Nielsen | 2023/9/26 |
Thiopurine 6TG treatment increases tumor immunogenicity and response to immune checkpoint blockade | OncoImmunology | Loulieta Nazerai Shona Caroline Willis Patricio Yankilevich Luca Di Leo Francesca Maria Bosisio | 2023/12/31 |
NetAllergen, a random forest model integrating MHC-II presentation propensity for improved allergenicity prediction | Bioinformatics Advances | Yuchen Li Peter Wad Sackett Morten Nielsen Carolina Barra | 2023/1/1 |
Extraordinary peptide-binding mode of a songbird MHC class-I molecule suggests mechanism to counter pathogen immune evasion | bioRxiv | Sandra Eltschkner Samantha Mellinger Sören Buus Morten Nielsen Kajsa M Paulsson | 2023/3/13 |
A meta-analysis of epitopes in prostate-specific antigens identifies opportunities and knowledge gaps | Gabriele Foos Nina Blazeska Morten Nielsen Hannah Carter Zeynep Kosaloglu-Yalcin | 2023/9/9 | |
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins | BMC bioinformatics | Daniel Marrama William D Chronister Luise Westernberg Randi Vita Zeynep Koşaloğlu-Yalçın | 2023/12/18 |
Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report | ImmunoInformatics | Pieter Meysman Justin Barton Barbara Bravi Liel Cohen-Lavi Vadim Karnaukhov | 2023/3/1 |
The structure of songbird MHC class I reveals antigen binding that is flexible at the N-terminus and static at the C-terminus | Frontiers in Immunology | Sandra Eltschkner Samantha Mellinger Soren Buus Morten Nielsen Kajsa M Paulsson | 2023/7/7 |
Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning | Science Advances | Jonas B Nilsson Saghar Kaabinejadian Hooman Yari Michel GD Kester Peter van Balen | 2023/11/24 |
Data-driven filtering for denoising of TCRpMHC single-cell data: a benchmark | bioRxiv | Helle Rus Povlsen Alessandro Montemurro Leon Eyrich Jessen Morten Nielsen | 2023/2/3 |
Co-Authors
