Yvan Saeys
Universiteit Gent
H-index: 75
Europe-Belgium
Top articles of Yvan Saeys
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools | Bioinformatics | Artuur Couckuyt Benjamin Rombaut Yvan Saeys Sofie Van Gassen | 2024/4/1 |
SpatialData: an open and universal data framework for spatial omics | Nature Methods | Luca Marconato Giovanni Palla Kevin A Yamauchi Isaac Virshup Elyas Heidari | 2024/3/20 |
Uncertainty-aware single-cell annotation with a hierarchical reject option | Bioinformatics | Lauren Theunissen Thomas Mortier Yvan Saeys Willem Waegeman | 2024/3/1 |
A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma | Cell | Joanna Pozniak Dennis Pedri Ewout Landeloos Yannick Van Herck Asier Antoranz | 2024/1/4 |
Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data | arXiv preprint arXiv:2404.16358 | Chananchida Sang-aram Robin Browaeys Ruth Seurinck Yvan Saeys | 2024/4/25 |
Defining and benchmarking open problems in single-cell analysis | Malte Luecken Scott Gigante Daniel Burkhardt Robrecht Cannoodt Daniel Strobl | 2024/4/4 | |
Topologically Regularized Data Embeddings | arXiv preprint arXiv:2301.03338 | Edith Heiter Robin Vandaele Tijl De Bie Yvan Saeys Jefrey Lijffijt | 2023/1/9 |
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability | Genome Biology | Anthony Sonrel Almut Luetge Charlotte Soneson Izaskun Mallona Pierre-Luc Germain | 2023/5/17 |
Functions of the RIP kinase family members in the skin | Corinne Urwyler-Rösselet Giel Tanghe Michael Devos Paco Hulpiau Yvan Saeys | 2023/10 | |
A framework for quantifiable local and global structure preservation in single-cell dimensionality reduction | bioRxiv | David Novak Cyril de Bodt Pierre Lambert John A Lee Sofie Van Gassen | 2023/11/23 |
Efficient approximation of asymmetric shapley values using functional decomposition | Arne Gevaert Anna Saranti Andreas Holzinger Yvan Saeys | 2023/8/22 | |
Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma: a … | Journal for Immunotherapy of Cancer | Michelle V Dietz Katrien LA Quintelier Job P van Kooten Nadine L de Boer Madelief Vink | 2023 |
An introduction to adversarially robust deep learning | IEEE Transactions on Pattern Analysis and Machine Intelligence | Jonathan Peck Bart Goossens Yvan Saeys | 2023/11/8 |
LXR signaling controls homeostatic dendritic cell maturation | Science immunology | Victor Bosteels Sandra Maréchal Clint De Nolf Sofie Rennen Jonathan Maelfait | 2023/5/12 |
A machine learning pipeline for predicting bone marrow oedema along the sacroiliac joints on magnetic resonance imaging | Arthritis & Rheumatology | Joris Roels Ann‐Sophie De Craemer Thomas Renson Manouk de Hooge Arne Gevaert | 2023/7/6 |
INAUGURAL ARTICLE by a Recently Elected Academy Member: Cell type–specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division | Proceedings of the National Academy of Sciences of the United States of America | Tori M Hoehler Dylan J Mankel Peter R Girguis Thomas M McCollom Nancy Y Kiang | 2023/6/6 |
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data | BioRxiv | Robin Browaeys Jeroen Gilis Chananchida Sang-Aram Pieter De Bleser Levi Hoste | 2023 |
Spotless: a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics | bioRxiv | Chananchida Sang-aram Robin Browaeys Ruth Seurinck Yvan Saeys | 2023/3/24 |
Gut Inflammation in axial Spondyloarthritis patients is characterized by a marked Type 17 skewed mucosal Innate‐like T cell signature | Arthritis & Rheumatology | Céline Mortier Katrien Quintelier Ann‐Sophie De Craemer Thomas Renson Liselotte Deroo | 2023/11 |
QT–GWAS: A novel method for unveiling biosynthetic loci affecting qualitative metabolic traits | Molecular plant | Marlies Brouckaert Meng Peng René Höfer Chiarina Darrah Véronique Storme | 2023/7/3 |
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