Yang Zhang
University of Michigan
H-index: 86
North America-United States
Top articles of Yang Zhang
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data | Nature Methods | Wei Zheng Qiqige Wuyun Yang Li Chengxin Zhang P Lydia Freddolino | 2024/1/2 |
Integrating deep learning, threading alignments, and a multi‐MSA strategy for high‐quality protein monomer and complex structure prediction in CASP15 | Proteins: Structure, Function, and Bioinformatics | Wei Zheng Qiqige Wuyun Peter L Freddolino Yang Zhang | 2023/8/31 |
De novo protein fold design through sequence-independent fragment assembly simulations | Proceedings of the National Academy of Sciences | Robin Pearce Xiaoqiang Huang Gilbert S Omenn Yang Zhang | 2023/1/24 |
BioLiP2: an updated structure database for biologically relevant ligand–protein interactions | Nucleic Acids Research | Chengxin Zhang Xi Zhang Peter L Freddolino Yang Zhang | 2024/1/5 |
ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models | Journal of Molecular Biology | Brinda Vallat Gerardo Tauriello Stefan Bienert Juergen Haas Benjamin M Webb | 2023/7/15 |
rMSA: a sequence search and alignment algorithm to improve RNA structure modeling | Journal of Molecular Biology | Chengxin Zhang Yang Zhang Anna Marie Pyle | 2023/7/15 |
From Protein Sequence to Structure: The Next Frontier in Cross‐Species Extrapolation for Chemical Safety Evaluations | Environmental Toxicology and Chemistry | Carlie A LaLone Donovan J Blatz Marissa A Jensen Sara MF Vliet Sally Mayasich | 2023/2 |
Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction | Nature Communications | Yang Li Chengxin Zhang Chenjie Feng Robin Pearce P Lydia Freddolino | 2023/9/16 |
GPU-I-TASSER: a GPU accelerated I-TASSER protein structure prediction tool | Bioinformatics | Elijah A MacCarthy Chengxin Zhang Yang Zhang Dukka B Kc | 2022/3/15 |
Progressive assembly of multi-domain protein structures from cryo-EM density maps | Nature computational science | Xiaogen Zhou Yang Li Chengxin Zhang Wei Zheng Guijun Zhang | 2022/4 |
Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction | PLOS Computational Biology | Yi-Heng Zhu Chengxin Zhang Dong-Jun Yu Yang Zhang | 2022/12/22 |
CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks | Nature Methods | Xi Zhang Biao Zhang Peter L Freddolino Yang Zhang | 2022/2/7 |
LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation | Nucleic acids research | Wei Zheng Qiqige Wuyun Xiaogen Zhou Yang Li Peter L Freddolino | 2022/7/5 |
Deep learning geometrical potential for high-accuracy ab initio protein structure prediction | Iscience | Yang Li Chengxin Zhang Dong-Jun Yu Yang Zhang | 2022/6/17 |
US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes | Nature Methods | Chengxin Zhang Morgan Shine Anna Marie Pyle Yang Zhang | 2022 |
PEPPI: Whole-proteome protein-protein interaction prediction through structure and sequence similarity, functional association, and machine learning | Journal of Molecular Biology | Eric W Bell Jacob H Schwartz Peter L Freddolino Yang Zhang | 2022/3/5 |
De Novo RNA Tertiary Structure Prediction at Atomic Resolution Using Geometric Potentials from Deep Learning | BioRxiv | Robin Pearce Gilbert S Omenn Yang Zhang | 2022/5/15 |
Fast and accurate ab initio protein structure prediction using deep learning potentials | PLoS computational biology | Robin Pearce Yang Li Gilbert S Omenn Yang Zhang | 2022/9/16 |
RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control | Cellular and Molecular Life Sciences | Harihar Milaganur Mohan Hanna Trzeciakiewicz Amit Pithadia Emily V Crowley Regina Pacitto | 2022/3 |
Integrating transcript expression profiles with protein homology inferences for gene function prediction | Genomics, Proteomics & Bioinformatics | Yi-Heng Zhu Chengxin Zhang Yan Liu Gilbert S Omenn Peter L Freddolino | 2022/5/11 |
Co-Authors
