Trey Ideker
University of California, San Diego
H-index: 106
North America-United States
Top articles of Trey Ideker
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A map of osteosarcoma cell architecture reveals convergence of pediatric cancer mutations on protein assemblies | Cancer Research | Mengzhou Hu Leah V Schaffer Edward L Huttlin Gege Qian Andrew Latham | 2024/3/22 |
Cancer mutations converge on a collection of protein assemblies to predict resistance to replication stress | Cancer Discovery | Xiaoyu Zhao Akshat Singhal Sungjoon Park JungHo Kong Robin Bachelder | 2024/3/1 |
Opportunities for basic, clinical, and bioethics research at the intersection of machine learning and genomics | Shurjo K Sen Eric D Green Carolyn M Hutter Mark Craven Trey Ideker | 2024/1/10 | |
A global multiscale map of protein assemblies from integration of protein interactions and images | Cancer Research | Leah V Schaffer Mengzhou Hu Edward L Huttlin Gege Qian Abantika Pal | 2024/3/22 |
State of the Interactomes: an evaluation of molecular networks for generating biological insights | bioRxiv | Sarah N Wright Scott Colton Leah V Schaffer Rudolf T Pillich Christopher Churas | 2024 |
Remodeling of cancer cells by chemotherapy | Cancer Research | Gege Qian Leah Schaffer Kyung-Mee Moon Leonard Foster Trey Ideker | 2024/3/22 |
Cancer mutations converge on a constellation of molecular assemblies to predict resistance to replication stress agents | Cancer Research | Xiaoyu Zhao Akshat Singhal SungJoon Park JungHo Kong Robin Bachelder | 2024/3/22 |
Learning to target CDK4/6 inhibitor resistance via a breast cancer-specific atlas of cellular mechanisms | Cancer Research | Adam Yaari Eduardo Farias Francisco Guedes Oliver Priebe Lee McDaniel | 2024/3/22 |
G2PT: Mechanistic genotype-phenotype translation using hierarchical transformers | Cancer Research | Ingoo Lee Sungjoon Park Hojung Nam Trey Ideker | 2024/3/22 |
A deep learning model of tumor cell architecture elucidates response and resistance to CDK4/6 inhibitors | Nature Cancer | Sungjoon Park Erica Silva Akshat Singhal Marcus R Kelly Kate Licon | 2024/3/5 |
Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks | Cell reports | Sarah N Wright Brittany S Leger Sara Brin Rosenthal Sophie N Liu Tongqiu Jia | 2023/8/29 |
Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation | Scientific reports | Kyle Ford Brenton P Munson Samson H Fong Rebecca Panwala Wai Keung Chu | 2023/5/11 |
Tools for assembling the cell: Towards the era of cell structural bioinformatics | Mengzhou Hu Xikun Zhang Andrew Latham Andrej Šali Trey Ideker | 2023 | |
Transcriptomic profiling of neurons from lithium-treated mouse brain | Journal of the Neurological Sciences | Xinzhu Tan Yuan Mei Boris Chaumette Trey Ideker Guy Rouleau | 2023/12/1 |
A multi-scale map of protein assemblies in the DNA damage response | Cell Systems | Anton Kratz Minkyu Kim Marcus R Kelly Fan Zheng Christopher A Koczor | 2023/6/21 |
Identifying genetic dependencies of replication stress using interpretable artificial intelligence | Cancer Research | Xiaoyu Zhao Akshat Singhal Trey Ideker | 2023/4/4 |
sali@ salilab. org, tideker@ health. ucsd. edu, emmalu@ stanford. edu Cells consist of large components, such as organelles, that recursively factor into smaller sys | Mengzhou Hu Xikun Zhang Andrew Latham Andrej Šali Trey Ideker | 2023 | |
Abstract A015: Prediction of immunotherapy response using mutations to cancer protein assemblies | Molecular Cancer Therapeutics | JungHo Kong Robin Bachelder Xiaoyu Zhao Sungjoon Park Akshat Singhal | 2023/12/1 |
209-LB: Discovery Metabolomics across a Population Scale Study Identifies a Community of Glycerolipids Associated with Incident Type 2 Diabetes | Diabetes | ARJANA BEGZATI KARLA P GODINEZ MACIAS JERAMIE WATROUS TAO LONG EDWARD KANTZ | 2023/6/20 |
HBV rewires liver cancer signaling by altering PP2A complexes | bioRxiv | Adriana Pitea Rigney E Turnham Manon Eckhardt Gwendolyn M Jang Zhong Xu | 2023/3/16 |
Co-Authors
