Sunduz Keles
University of Wisconsin-Madison
H-index: 51
North America-United States
Top articles of Sunduz Keles
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods | Null Null Shantanu Jain Constantina Bakolitsa Steven E Brenner Predrag Radivojac | 2024 | |
Integrative annotation scores of variants for impact on RNA binding protein activities | Bioinformatics | Jingqi Duan Audrey P Gasch Sündüz Keleş | 2024/4/18 |
Whole genome methylation sequencing in blood identifies extensive differential DNA methylation in late‐onset dementia due to Alzheimer's disease | Alzheimer's & Dementia | Coleman Breen Ligia A Papale Lindsay R Clark Phillip E Bergmann Andy Madrid | 2024/2 |
PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans | Developmental Cell | Brian H Carrick Sarah L Crittenden Fan Chen MaryGrace Linsley Jennifer Woodworth | 2024/1/25 |
Empirical Bayes spline model learns multi-way genomic interactions from single cell 3D genome data | bioRxiv | Kwangmoon Park Sunduz Keles | 2024 |
Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic … | GENOME BIOLOGY | Shantanu Jain Constantina Bakolitsa E Brenner Steven Predrag Radivojac John Moult | 2024 |
MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing | Bioinformatics | Ali Osman Berk Şapcı Shan Lu Shuchen Yan Ferhat Ay Oznur Tastan | 2023/10/1 |
AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver | Bioinformatics | Chenyang Dong Siqi Shen Sündüz Keleş | 2023/4/1 |
Secondary bile acids function through the vitamin D receptor in myeloid progenitors to promote myelopoiesis | Blood Advances | Brandon Thompson Shan Lu Julio Revilla Md Jashim Uddin David N Oakland | 2023/6/5 |
Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle | bioRxiv | Kwangmoon Park Sündüz Keleş | 2023/1/28 |
Interconnections between DDX41-Dependent Post-Transcriptional and GATA Factor-Instigated Transcriptional Mechanisms That Govern Hematopoiesis | Blood | Christina Jurotich Jeong-Ah Kim Kirby D Johnson Siqi Shen Ruiqi Liao | 2023/11/28 |
Debiased personalized gene coexpression networks for population-scale scRNA-seq data | Genome Research | Shan Lu Sündüz Keleş | 2023/6/1 |
A single tyrosine in a PUF RNA binding protein controls its mRNA binding landscape and separates its distinct biological functions | The Journal of Biological Chemistry | MaryGrace Linsley Brian Carrick Fan Chen Sarah Crittenden Peggy Kroll-Conner | 2023 |
Deep Phenotyping of Sleep inDrosophila | MF Keles A Sapci C Brody I Palmer C Le | 2023/11/2 | |
Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data | bioRxiv | Shan Lu Sündüz Keleş | 2023/4/28 |
Discriminating activities of DEAD-Box Helicase 41 from myeloid malignancy-associated germline variants by genetic rescue | Leukemia | Jeong-Ah Kim Siqi Shen Daniel R Matson Lauren N Lovrien Kelcy J Smith-Simmer | 2023/1 |
Deep Phenotyping of Sleep in Drosophila | MF Keles A Sapci C Brody I Palmer C Le | 2023/11/2 | |
Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks | The Journal of Clinical Investigation | Mabel Minji Jung Siqi Shen Giovanni A Botten Thomas Olender Koichi R Katsumura | 2023/4/3 |
Sparse higher order partial least squares for simultaneous variable selection, dimension reduction, and tensor denoising | arXiv preprint arXiv:2310.09428 | Kwangmoon Park Sündüz Keleş | 2023/10/13 |
scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data | Bioinformatics | Siqi Shen Ye Zheng Sündüz Keleş | 2022/7/15 |
Co-Authors
