Stein Aerts

Stein Aerts

Katholieke Universiteit Leuven

H-index: 57

Europe-Belgium

About Stein Aerts

Stein Aerts, With an exceptional h-index of 57 and a recent h-index of 46 (since 2020), a distinguished researcher at Katholieke Universiteit Leuven, specializes in the field of Bioinformatics, gene regulation, single-cell regulatory genomics.

His recent articles reflect a diverse array of research interests and contributions to the field:

Cell-type-directed design of synthetic enhancers

Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation

Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics

Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Systematic benchmarking of single-cell ATAC-sequencing protocols

Synaptic deregulation of cholinergic projection neurons causes olfactory dysfunction across 5 fly Parkinsonism models

Neuronal identity defines α-synuclein and tau toxicity

Stein Aerts Information

University

Position

Professor @ ; VIB Group Leader

Citations(all)

18203

Citations(since 2020)

12240

Cited By

9844

hIndex(all)

57

hIndex(since 2020)

46

i10Index(all)

102

i10Index(since 2020)

83

Email

University Profile Page

Katholieke Universiteit Leuven

Google Scholar

View Google Scholar Profile

Stein Aerts Skills & Research Interests

Bioinformatics

gene regulation

single-cell regulatory genomics

Top articles of Stein Aerts

Title

Journal

Author(s)

Publication Date

Cell-type-directed design of synthetic enhancers

Nature

Ibrahim I Taskiran

Katina I Spanier

Hannah Dickmänken

Niklas Kempynck

Alexandra Pančíková

...

2024/2/1

Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation

Nature Cell Biology

Carmen Bravo González-Blas

Irina Matetovici

Hanne Hillen

Ibrahim Ihsan Taskiran

Roel Vandepoel

...

2024/1/5

Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics

bioRxiv

Suresh Poovathingal

Kristofer Davie

Roel Vandepoel

Nicholas Poulvellarie

Annelien Verfaillie

...

2024

Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation

Cells

Evelyne Naus

Marleen Derweduwe

Youlia Lampi

Annelies Claeys

Jarne Pauwels

...

2023/3/21

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Nature methods

Carmen Bravo González-Blas

Seppe De Winter

Gert Hulselmans

Nikolai Hecker

Irina Matetovici

...

2023/9

Systematic benchmarking of single-cell ATAC-sequencing protocols

Nature biotechnology

Florian V De Rop

Gert Hulselmans

Chris Flerin

Paula Soler-Vila

Albert Rafels

...

2023/8/3

Synaptic deregulation of cholinergic projection neurons causes olfactory dysfunction across 5 fly Parkinsonism models

bioRxiv

Ulrike Pech

Jasper Janssens

Nils Schoovaerts

Sabine Kuenen

Samira Makhzami

...

2023/3/11

Neuronal identity defines α-synuclein and tau toxicity

Neuron

Roman Praschberger

Sabine Kuenen

Nils Schoovaerts

Natalie Kaempf

Jeevanjot Singh

...

2023/5/17

Mitochondria metabolism sets the species-specific tempo of neuronal development

Science

Ryohei Iwata

Pierre Casimir

Emir Erkol

Leïla Boubakar

Mélanie Planque

...

2023/1/26

Shared enhancer gene regulatory networks between wound and oncogenic programs

Elife

Swann Floc'hlay

Ramya Balaji

Dimitrije Stanković

Valerie M Christiaens

Carmen Bravo González-Blas

...

2023/5/3

Emerging questions in transcriptional regulation

Cell Systems

Elphege P Nora

Stein Aerts

Patricia J Wittkopp

Harmen J Bussemaker

Martha Bulyk

...

2023/4/19

Hippo signaling instructs ectopic but not normal organ growth

Science

W Kowalczyk

L Romanelli

M Atkins

H Hillen

C Bravo González-Blas

...

2022/11/18

Decoding gene regulation in the fly brain

Nature

Jasper Janssens

Sara Aibar

Ibrahim Ihsan Taskiran

Joy N Ismail

Alicia Estacio Gomez

...

2022/1/27

How regulatory sequences learn cell representations

Nature Methods

Stein Aerts

2022/9

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Science

Hongjie Li

Jasper Janssens

Maxime De Waegeneer

Sai Saroja Kolluru

Kristofer Davie

...

2022/3/4

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

Elife

Florian V De Rop

Joy N Ismail

Carmen Bravo González-Blas

Gert J Hulselmans

Christopher Campbell Flerin

...

2022/2/23

Enhancer grammar of liver cell types and hepatocyte zonation states

bioRxiv

Carmen Bravo González-Blas

Irina Matetovici

Hanne Hillen

Ibrahim Ihsan Taskiran

Roel Vandepoel

...

2022/12/9

Cell type diversity in a developing octopus brain

Nature Communications

Ruth Styfhals

Grygoriy Zolotarov

Gert Hulselmans

Katina I Spanier

Suresh Poovathingal

...

2022/11/30

Comparative analysis of antibody-and lipid-based multiplexing methods for single-cell RNA-seq

Genome Biology

Viacheslav Mylka

Irina Matetovici

Suresh Poovathingal

Jeroen Aerts

Niels Vandamme

...

2022/2/16

Fly Cell Atlas: a single-cell transcriptomic atlas of the adult fruit fly

Science

Hongjie Li

Jasper Janssens

Maxime De Waegeneer

Sai Saroja Kolluru

Kristofer Davie

...

2022/3/4

See List of Professors in Stein Aerts University(Katholieke Universiteit Leuven)

Co-Authors

H-index: 147
Bart De Strooper

Bart De Strooper

Katholieke Universiteit Leuven

H-index: 77
Jan Cools

Jan Cools

Katholieke Universiteit Leuven

H-index: 69
Yves Moreau

Yves Moreau

Katholieke Universiteit Leuven

H-index: 46
Bernard Thienpont

Bernard Thienpont

Katholieke Universiteit Leuven

H-index: 29
Jasper Wouters

Jasper Wouters

Katholieke Universiteit Leuven

H-index: 20
Zeynep Kalender Atak

Zeynep Kalender Atak

University of Cambridge

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