Russell Schwartz
Carnegie Mellon University
H-index: 38
North America-United States
Top articles of Russell Schwartz
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Marker selection strategies for circulating tumor DNA guided by phylogenetic inference | bioRxiv | Xuecong Fu Zhicheng Luo Yueqian Deng William A LaFramboise David Bartlett | 2024 |
Optimizing Design of Genomics Studies for Clonal Evolution Analysis | bioRxiv | Arjun Srivatsa Russell Schwartz | 2024 |
Integrating single nucleotide variants (SNVs), copy number alterations (CNAs), and structural variants (SVs) into single-cell clonal lineage inference | Cancer Research | Nishat Bristy Xuecong Fu Russell Schwartz | 2024/3/22 |
Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History | bioRxiv | Chih Hao Wu Suraj Joshi Welles Robinson Paul F Robbins Russell Schwartz | 2024 |
Computational methods for optimizing marker selection, clonal lineage reconstruction, and longitudinal tracking of clonal dynamics via circulating tumor DNA (ctDNA) | Cancer Research | Xuecong Fu Yueqian Deng Zhicheng Luo William Laframboise David Bartlett | 2024/3/22 |
Machine learning applications in cancer genomics | Omar El-Charif Russell Schwartz Ye Yuan Yifeng Tao | 2024/1/1 | |
Modeling the Effect of Spatial Structure on Solid Tumor Evolution and Circulating Tumor DNA Composition | Cancers | Thomas Rachman David Bartlett William LaFramboise Patrick Wagner Russell Schwartz | 2024/2/20 |
The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and training | C Brooksbank M Brazas N Mulder R Schwartz V Ras | 2024/1/7 | |
Grand challenges in bioinformatics education and training | Nature Biotechnology | Esra Büşra Işık Michelle D Brazas Russell Schwartz Bruno Gaeta Patricia M Palagi | 2023/8 |
A clonal evolution simulator for planning somatic evolution studies | Journal of Computational Biology | Arjun Srivatsa Haoyun Lei Russell Schwartz | 2023/8/1 |
Simulating the distortion of clonal fractions in ctDNA due to spatially heterogenous selection | Cancer Research | Thomas W Rachman Oana Carja Russell Schwartz | 2023/4/4 |
Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV) | bioRxiv | Nishat Anjum Bristy Xuecong Fu Russell Schwartz | 2023 |
Ten simple rules for writing a PLOS Computational Biology quick tips article | PLOS Computational Biology | Patricia M Palagi Russell Schwartz Scott Markel BF Francis Ouellette | 2023/12/21 |
Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer | Bioinformatics | Haoyun Lei Xiaoyan A Guo Yifeng Tao Kai Ding Xuecong Fu | 2022/7/1 |
Improved deconvolution of combined bulk and single-cell RNA-sequencing data | Cancer Research | Haoyun Lei Xiaoyan A Guo Yifeng Tao Kai Ding Xuecong Fu | 2022/6/15 |
A simulator for somatic evolution study design | bioRxiv | Arjun Srivatsa Haoyun Lei Russell Schwartz | 2022 |
Interpretable deep learning for chromatin-informed inference of transcriptional programs driven by somatic alterations across cancers | Nucleic Acids Research | Yifeng Tao Xiaojun Ma Drake Palmer Russell Schwartz Xinghua Lu | 2022/10/28 |
Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations | Bioinformatics | Xuecong Fu Haoyun Lei Yifeng Tao Russell Schwartz | 2022/7 |
De novo Prediction of Cell-Drug Sensitivities Using Deep Learning-based Graph Regularized Matrix Factorization | Shuangxia Ren Yifeng Tao Ke Yu Yifan Xue Russell Schwartz | 2021 | |
Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers | Journal of Computational Biology | Xuecong Fu Haoyun Lei Yifeng Tao Kerstin Heselmeyer-Haddad Irianna Torres | 2021/11/1 |
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