Bonnie Berger
Massachusetts Institute of Technology
H-index: 83
North America-United States
Top articles of Bonnie Berger
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm | Meghana Kshirsagar Artur Meller Ian Humphreys Samuel Sledzieski Yixi Xu | 2024/4/26 | |
Dirichlet Flow Matching with Applications to DNA Sequence Design | arXiv preprint arXiv:2402.05841 | Hannes Stark Bowen Jing Chenyu Wang Gabriele Corso Bonnie Berger | 2024/2/8 |
AlphaFold Meets Flow Matching for Generating Protein Ensembles | arXiv preprint arXiv:2402.04845 | Bowen Jing Bonnie Berger Tommi Jaakkola | 2024/2/7 |
Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets | bioRxiv | Matthew Man-Hou Hong David Froelicher Ricky Magner Victoria Popic Bonnie Berger | 2024 |
Lipophorin receptors genetically modulate neurodegeneration caused by reduction of Psn expression in the aging Drosophila brain | Genetics | Jongkyun Kang Chen Zhang Yuhao Wang Jian Peng Bonnie Berger | 2024/1 |
Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing | Genome Biology | Haris Smajlović Ariya Shajii Bonnie Berger Hyunghoon Cho Ibrahim Numanagić | 2023/1/11 |
Assessing transcriptomic reidentification risks using discriminative sequence models | Genome Research | Shuvom Sadhuka Daniel Fridman Bonnie Berger Hyunghoon Cho | 2023 |
CD4+ T cells are homeostatic regulators during Mtb reinfection | bioRxiv | Joshua D Bromley Sharie Keanne C Ganchua Sarah K Nyquist Pauline Maiello Michael Chao | 2023/12/21 |
The scverse project provides a computational ecosystem for single-cell omics data analysis | Nature biotechnology | Isaac Virshup Danila Bredikhin Lukas Heumos Giovanni Palla Gregor Sturm | 2023/5 |
CD8+ lymphocytes are critical for early control of tuberculosis in macaques | Journal of Experimental Medicine | Caylin G Winchell Sarah K Nyquist Michael C Chao Pauline Maiello Amy J Myers | 2023/10/16 |
Codon: A compiler for high-performance pythonic applications and dsls | Ariya Shajii Gabriel Ramirez Haris Smajlović Jessica Ray Bonnie Berger | 2023/2/17 | |
virDTL: Viral recombination analysis through phylogenetic reconciliation and its application to sarbecoviruses and SARS-CoV-2 | Journal of Computational Biology | Sumaira Zaman Samuel Sledzieski Bonnie Berger Yi-Chieh Wu Mukul S Bansal | 2023/1/1 |
Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms | arXiv preprint arXiv:2312.04323 | Bowen Jing Tommi Jaakkola Bonnie Berger | 2023/12/7 |
Learning Scalar Fields for Molecular Docking with Fast Fourier Transforms | Bowen Jing Tommi S Jaakkola Bonnie Berger | 2023/10/13 | |
Learning the Language of Antibody Hypervariability | bioRxiv | Rohit Singh Chiho Im Taylor Sorenson Yu Qiu Maria Wendt | 2023/4/28 |
Efficient minimizer orders for large values of k using minimum decycling sets | Genome Research | David Pellow Lianrong Pu Bariş Ekim Lior Kotlar Bonnie Berger | 2023/7/1 |
Democratizing protein language models with parameter-efficient fine-tuning | bioRxiv | Samuel Sledzieski Meghana Kshirsagar Minkyung Baek Bonnie Berger Rahul Dodhia | 2023/11/10 |
SCA: recovering single-cell heterogeneity through information-based dimensionality reduction | Genome Biology | Benjamin DeMeo Bonnie Berger | 2023/8/25 |
Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome | PloS one | Lokender Kumar Nathanael Brenner Samuel Sledzieski Monsurat Olaosebikan Liza M Roger | 2023/2/3 |
Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens | Molecular Cell | Jordan E Otto Oana Ursu Alexander P Wu Evan B Winter Michael S Cuoco | 2023/4/20 |
