Paul Medvedev
Penn State University
H-index: 32
North America-United States
Top articles of Paul Medvedev
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
PLA-complexity of k-mer multisets | bioRxiv | Md Hasin Abrar Paul Medvedev | 2024 |
Compression algorithm for colored de Bruijn graphs | bioRxiv | Amatur Rahman Yoann Dufresne Paul Medvedev | 2023/5/14 |
Theoretical analysis of edit distance algorithms | Communications of the ACM | Paul Medvedev | 2023/11/17 |
The omnitig framework can improve genome assembly contiguity in practice | bioRxiv | Sebastian Schmidt Santeri Toivonen Paul Medvedev Alexandru I Tomescu | 2023/2/2 |
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes | Genome Biology and Evolution | Marta Tomaszkiewicz Kristoffer Sahlin Paul Medvedev Makova Kateryna D. | 2023/11 |
Exact Sketch-Based Read Mapping | bioRxiv | Tizian Schulz Paul Medvedev | 2023 |
The complete sequence of a human Y chromosome | Nature | Arang Rhie Sergey Nurk Monika Cechova Savannah J Hoyt Dylan J Taylor | 2023/9/14 |
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch) | Journal of Heredity | Merly Escalona Jake VanCampen Nicholas W Maurer Marina Haukness Mariam Okhovat | 2023/1/1 |
Efficient mapping of accurate long reads in minimizer space with mapquik | Genome research | Bariş Ekim Kristoffer Sahlin Paul Medvedev Bonnie Berger Rayan Chikhi | 2023/7/1 |
The complete sequence and comparative analysis of ape sex chromosomes | bioRxiv | Kateryna D Makova Brandon D Pickett Robert S Harris Gabrielle A Hartley Monika Cechova | 2023/12/1 |
Theoretical analysis of sequencing bioinformatics algorithms and beyond | Communications of the ACM | Paul Medvedev | 2023/6/22 |
Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts | bioRxiv | Askar Gafurov Tomáš Vinař Paul Medvedev Broňa Brejová | 2023/11/22 |
GPU-accelerated and pipelined methylation calling | Bioinformatics Advances | Yilin Feng Gulsum Gudukbay Akbulut Xulong Tang Jashwant Raj Gunasekaran Amatur Rahman | 2022/1/1 |
The K-mer File Format: a standardized and compact disk representation of sets of k-mers | Bioinformatics | Yoann Dufresne Teo Lemane Pierre Marijon Pierre Peterlongo Amatur Rahman | 2022/9/15 |
Kmtricks: efficient and flexible construction of bloom filters for large sequencing data collections | Bioinformatics Advances | Téo Lemane Paul Medvedev Rayan Chikhi Pierre Peterlongo | 2022/1/1 |
Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs | Genome Research | Amatur Rahman Paul Medvedev | 2022/9/1 |
Markov chains improve the significance computation of overlapping genome annotations | Bioinformatics | Askar Gafurov Broňa Brejová Paul Medvedev | 2022/6/27 |
The minimizer Jaccard estimator is biased and inconsistent | Bioinformatics | Mahdi Belbasi Antonio Blanca Robert S Harris David Koslicki Paul Medvedev | 2022/6/27 |
The statistics of k-mers from a sequence undergoing a simple mutation process without spurious matches | Journal of Computational Biology | Antonio Blanca Robert S Harris David Koslicki Paul Medvedev | 2022/2/1 |
Mapping-friendly sequence reductions: Going beyond homopolymer compression | Iscience | Luc Blassel Paul Medvedev Rayan Chikhi | 2022/11/18 |
Co-Authors
