David Koslicki
Penn State University
H-index: 21
North America-United States
Top articles of David Koslicki
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample | Bioinformatics | David Koslicki Stephen White Chunyu Ma Alexei Novikov | 2024/2/1 |
MetagenomicKG: a knowledge graph for metagenomic applications | bioRxiv | Chunyu Ma Shaopeng Liu David Koslicki | 2024 |
Connecting Syncmers to FracMinHash: similarities and advantages | bioRxiv | Shaopeng Liu David Koslicki | 2023/11/13 |
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges | Journal of Clinical and Translational Science | Karamarie Fecho Chris Bizon Tursynay Issabekova Sierra Moxon Anne E Thessen | 2023/1 |
Fast, lightweight, and accurate metagenomic functional profiling using FracMinHash sketches | bioRxiv | Mahmudur Rahman Hera Shaopeng Liu Wei Wei Judith S. Rodriguez Chunyu Ma | 2023 |
KGML-xDTD: a knowledge graph–based machine learning framework for drug treatment prediction and mechanism description | GigaScience | Chunyu Ma Zhihan Zhou Han Liu David Koslicki | 2023 |
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles | GigaScience | Varuni Sarwal Jaqueline Brito Serghei Mangul David Koslicki | 2023 |
Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash | Genome research | Mahmudur Rahman Hera N Tessa Pierce-Ward David Koslicki | 2023/7/1 |
A translational approach to identifying and targeting TNF signaling in idiopathic multicentric Castleman disease | Blood | Melanie Mumau Abiola Irvine Chunyu Ma Sheila K Pierson Brent Shaw | 2023/11/28 |
Finding phylogeny-aware and biologically meaningful averages of metagenomic samples: L2UniFrac | Bioinformatics | Wei Wei Andrew Millward David Koslicki | 2023/6/1 |
Prokrustean graph: An efficient data structure used to extract sequence information for arbitrary k-mer size ranges | bioRxiv | Adam Park David Koslicki | 2023/11/21 |
ARAX: a graph-based modular reasoning tool for translational biomedicine | Bioinformatics | Amy K Glen Chunyu Ma Luis Mendoza Finn Womack EC Wood | 2023/3/1 |
The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches | Journal of Computational Biology | Antonio Blanca Robert S Harris David Koslicki Paul Medvedev | 2022/2/1 |
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science | Deepak R Unni Sierra AT Moxon Michael Bada Matthew Brush Richard Bruskiewich | 2022/8 | |
Using the UniFrac metric on Whole Genome Shotgun data | bioRxiv | Wei Wei David Koslicki | 2022/1/20 |
The minimizer Jaccard estimator is biased and inconsistent | Bioinformatics | Mahdi Belbasi Antonio Blanca Robert S Harris David Koslicki Paul Medvedev | 2022/6/27 |
Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers | BioRxiv | Luiz Irber Phillip T Brooks Taylor Reiter N Tessa Pierce-Ward Mahmudur Rahman Hera | 2022/1/12 |
CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices | Bioinformatics | Shaopeng Liu David Koslicki | 2022/7 |
WGSUniFrac: applying UniFrac metric to whole genome shotgun data | Wei Wei David Koslicki | 2022 | |
Critical assessment of metagenome interpretation: the second round of challenges | Nature methods | Fernando Meyer Adrian Fritz Zhi-Luo Deng David Koslicki Till Robin Lesker | 2022/4 |
Co-Authors
