Nicola Bordin
University College London
H-index: 15
Europe-United Kingdom
Top articles of Nicola Bordin
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Exploring structural diversity across the protein universe with The Encyclopedia of Domains | bioRxiv | AM Lau Nicola Bordin Shaun M Kandathil Ian Sillitoe Vaishali P Waman | 2024/3/19 |
CATH 2024: CATH-AlphaFlow Doubles the Number of Structures in CATH and Reveals Nearly 200 New Folds | Journal of Molecular Biology | Vaishali P Waman Nicola Bordin Rachel Alcraft Robert Vickerstaff Clemens Rauer | 2024/3/27 |
The Streptococcus pneumoniae transcriptome in patient cerebrospinal fluid identifies novel virulence factors required for meningitis | bioRxiv | Emma C Wall Jose-Afonso Guerra-Assuncao Marie Yang Rutger Konig Teerawit Audshasai | 2024 |
Novel machine learning approaches revolutionize protein knowledge | Nicola Bordin Christian Dallago Michael Heinzinger Stephanie Kim Maria Littmann | 2023/4/1 | |
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms | Communications biology | Nicola Bordin Ian Sillitoe Vamsi Nallapareddy Clemens Rauer Su Datt Lam | 2023/2/8 |
Large-scale clustering of AlphaFold2 3D models shines light on the structure and function of proteins | Molecular Cell | Nicola Bordin Andy M Lau Christine Orengo | 2023/11/16 |
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units | Biomolecules | Tolulope Adeyelu Nicola Bordin Vaishali P Waman Marta Sadlej Ian Sillitoe | 2023/2/2 |
Broad functional profiling of fission yeast proteins using phenomics and machine learning | Elife | María Rodríguez-López Nicola Bordin Jon Lees Harry Scholes Shaimaa Hassan | 2023/10/3 |
Predicting human and viral protein variants affecting COVID-19 susceptibility and repurposing therapeutics (preprint) | Vaishali P Waman Paul Ashford Su Datt Lam Neeladri Sen Mahnaz Abbasian | 2023 | |
Chainsaw: protein domain segmentation with fully convolutional neural networks | bioRxiv | Jude Wells Alex Hawkins-Hooker Nicola Bordin Ian Sillitoe Brooks Paige | 2023/7/19 |
CATHe: Detection of remote homologues for CATH superfamilies using embeddings from protein language models | Bioinformatics | Vamsi Nallapareddy Nicola Bordin Ian Sillitoe Michael Heinzinger Maria Littmann | 2023/1/1 |
The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors | Mihaly Varadi Nicola Bordin Christine Orengo Sameer Velankar | 2023/4/1 | |
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs | Briefings in bioinformatics | Neeladri Sen Ivan Anishchenko Nicola Bordin Ian Sillitoe Sameer Velankar | 2022/7/18 |
Contrastive learning on protein embeddings enlightens midnight zone | NAR Genomics and Bioinformatics | Michael Heinzinger Maria Littmann Ian Sillitoe Nicola Bordin Christine Orengo | 2022/6 |
Detection and enumeration of Lak megaphages in microbiome samples by endpoint and quantitative PCR | STAR protocols | Marco A Crisci Paula M Corsini Nicola Bordin Lin-Xing Chen Jillain F Banfield | 2022/3/18 |
SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms | Molecular Systems Biology | Seán I O’Donoghue Andrea Schafferhans Neblina Sikta Christian Stolte Sandeep Kaur | 2021/9/1 |
Closely related Lak megaphages replicate in the microbiomes of diverse animals | iScience | Marco A Crisci Lin-Xing Chen Audra E Devoto Adair L Borges Nicola Bordin | 2021/7/16 |
Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds | Nicola Bordin Ian Sillitoe Jonathan G Lees Christine Orengo | 2021/5/10 | |
CATH: increased structural coverage of functional space | Nucleic acids research | Ian Sillitoe Nicola Bordin Natalie Dawson Vaishali P Waman Paul Ashford | 2021/1/8 |
Clustering FunFams using sequence embeddings improves EC purity | Bioinformatics | Maria Littmann Nicola Bordin Michael Heinzinger Konstantin Schütze Christian Dallago | 2021/10/15 |
Co-Authors
