Karel Berka
Univerzita Palackého v Olomouci
H-index: 37
Europe-Czech Republic
Top articles of Karel Berka
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era | Nucleic Acids Research | Anna Špačková Ondřej Vávra Tomáš Raček Václav Bazgier David Sehnal | 2024/1/5 |
How Usable Are Published Permeability Data? | Kateřina Storchmannová Martin Balouch Jakub Juračka František Štěpánek Karel Berka | 2024/3/25 | |
αCharges: partial atomic charges for AlphaFold structures in high quality | Nucleic Acids Research | Ondřej Schindler Karel Berka Alessio Cantara Aleš Křenek Dominik Tichý | 2023/7/5 |
Expanding the squaramide library as mycobacterial ATP synthase inhibitors: Innovative synthetic pathway and biological evaluation | Bioorganic & Medicinal Chemistry | Jan Chasák Lauren Oorts Milan Dak Veronika Šlachtová Václav Bazgier | 2023/11/15 |
Computational Prodrug Design Methodology for Liposome Formulability Enhancement of Small-Molecule APIs | Molecular Pharmaceutics | Martin Balouch Kateřina Storchmannová František Štěpánek Karel Berka | 2023/3/20 |
Analysis and Visualization of Protein Channels, Tunnels and Pores with Moleonline & Channelsdb 2.0 | Anna Špačková Václav Bazgier Tomáš Raček David Sehnal Radka Svobodová | 2023/10 | |
Small change–big consequence: The impact of C15-C16 double bond in a D‑ring of estrone on estrogen receptor activity | The Journal of Steroid Biochemistry and Molecular Biology | Petr Vonka Lucie Rarova Vaclav Bazgier Vlastimil Tichy Tamara Kolarova | 2023/10/1 |
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations | Nucleic Acids Research | Aliaksei Chareshneu Adam Midlik Crina-Maria Ionescu Alexander Rose Vladimír Horský | 2023/7/5 |
PDBe-KB: collaboratively defining the biological context of structural data | Nucleic acids research | 2022/1/7 | |
Discovering the general architecture of protein families with OverProt | ENBIK2022 conference proceedings | A Midlik I Hutařová Vařeková J Hutař A Chareshneu R Svobodová | 2022 |
Novel heterocyclic hydroxamates as inhibitors of the mycobacterial zinc metalloprotease Zmp1 to probe its mechanism of function | European Journal of Medicinal Chemistry | Milan Dak Veronika Šlachtová Marek Šebela Václav Bazgier Karel Berka | 2022/12/15 |
OverProt: secondary structure consensus for protein families | Bioinformatics | Adam Midlik Ivana Hutařová Vařeková Jan Hutař Aliaksei Chareshneu Karel Berka | 2022/7/15 |
Antitumour drugs targeting tau R3 VQIVYK and Cys322 prevent seeding of endogenous tau aggregates by exogenous seeds | The FEBS Journal | Narendran Annadurai Lukáš Malina Mario Salmona Luisa Diomede Antonio Bastone | 2022/4 |
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures | Nucleic acids research | David Sehnal Sebastian Bittrich Mandar Deshpande Radka Svobodová Karel Berka | 2021/7/2 |
Uncovering of cytochrome P450 anatomy by SecStrAnnotator | Scientific Reports | Adam Midlik Veronika Navrátilová Taraka Ramji Moturu Jaroslav Koča Radka Svobodová | 2021/6/11 |
2DProts: database of family-wide protein secondary structure diagrams | Bioinformatics | Ivana Hutařová Vařeková Jan Hutař Adam Midlik Vladimír Horský Eva Hladká | 2021/12/1 |
CATH: increased structural coverage of functional space | Nucleic acids research | Ian Sillitoe Nicola Bordin Natalie Dawson Vaishali P Waman Paul Ashford | 2021/1/8 |
Optimized SQE atomic charges for peptides accessible via a web application | Journal of cheminformatics | Ondřej Schindler Tomáš Raček Aleksandra Maršavelski Jaroslav Koča Karel Berka | 2021/6/30 |
High-performance macromolecular data delivery and visualization for the web. Corrigendum | Acta crystallographica. Section D, Structural biology | David Sehnal Radka Svobodová Karel Berka Alexander S Rose Stephen K Burley | 2021/1/1 |
ELIXIR and Toxicology: a community in development | F1000Research | Marvin Martens Rob Stierum Emma L Schymanski Chris T Evelo Reza Aalizadeh | 2021 |
Co-Authors
