Li C Xue
Radboud Universiteit
H-index: 22
Europe-Netherlands
Top articles of Li C Xue
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning | Journal of Open Source Software | Giulia Crocioni Dani L Bodor Coos Baakman Farzaneh M Parizi Daniel-T Rademaker | 2024/2/27 |
Synergizing Geometric Deep Learning and Data-Centric Methods for Improved Protein Structural Alignment | bioRxiv | Daniel Tobias Rademaker Jarek Miron van Dijk Farzaneh Meimandi Parizi Li C Xue | 2023 |
Improving generalizability for MHC-I binding peptide predictions through geometric deep learning | bioRxiv | Dario F Marzella Giulia Crocioni Tadija Radusinović Daniil Lepikhov Heleen Severin | 2023/12/5 |
DeepRank-GNN: a graph neural network framework to learn patterns in protein–protein interfaces | Bioinformatics | Manon Réau Nicolas Renaud Li C Xue Alexandre MJJ Bonvin | 2023/1/1 |
GradPose: a very fast and memory-efficient gradient descent-based tool for superimposing millions of protein structures from computational simulations | Bioinformatics | Daniel T Rademaker Kevin J van Geemen Li C Xue | 2023/8/1 |
The PANDORA software for anchor-restrained peptide: MHC modeling | Dario F Marzella Giulia Crocioni Farzaneh M Parizi Li C Xue | 2023/6/1 | |
MetaScore: a novel machine-learning-based approach to improve traditional scoring functions for scoring protein–protein docking conformations | Biomolecules | Yong Jung Cunliang Geng Alexandre MJJ Bonvin Li C Xue Vasant G Honavar | 2023/1/6 |
Understanding structure-guided variant effect predictions using 3D convolutional neural networks | Frontiers in molecular biosciences | Gayatri Ramakrishnan Coos Baakman Stephan Heijl Bas Vroling Ragna van Horck | 2023 |
PANDORA v2. 0: Benchmarking peptide-MHC II models and software improvements | Frontiers in Immunology | Farzaneh M Parizi Dario F Marzella Gayatri Ramakrishnan Peter AC ‘t Hoen Mohammad Hossein Karimi-Jafari | 2023/12/8 |
Entropy and variability: A second opinion by deep learning | Biomolecules | Daniel T Rademaker Li C Xue Peter AC ‘t Hoen Gert Vriend | 2022/11/23 |
PANDORA: a fast, anchor-restrained modelling protocol for peptide: MHC complexes | Frontiers in Immunology | Dario F Marzella Farzaneh M Parizi Derek van Tilborg Nicolas Renaud Daan Sybrandi | 2022/5/10 |
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces | Nature communications | Nicolas Renaud Cunliang Geng Sonja Georgievska Francesco Ambrosetti Lars Ridder | 2021/12/3 |
An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45 | Panagiotis I Koukos Jorge Roel‐Touris Francesco Ambrosetti Cunliang Geng Jörg Schaarschmidt | 2020/8 | |
iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines | SoftwareX | Nicolas Renaud Yong Jung Vasant Honavar Cunliang Geng Alexandre MJJ Bonvin | 2020/1/1 |
iScore: a novel graph kernel-based function for scoring protein–protein docking models | Bioinformatics | Cunliang Geng Yong Jung Nicolas Renaud Vasant Honavar Alexandre MJJ Bonvin | 2020/1/1 |
Co-Authors
