Karl R. Clauser

Karl R. Clauser

Harvard University

H-index: 71

North America-United States

About Karl R. Clauser

Karl R. Clauser, With an exceptional h-index of 71 and a recent h-index of 52 (since 2020), a distinguished researcher at Harvard University, specializes in the field of Proteogenomics, Immunopeptidomics, Extracellular Matrix, Novel unannotated ORFs, Spectrum Mill MS/MS software.

His recent articles reflect a diverse array of research interests and contributions to the field:

Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma

Abstract A038: Non-canonical MHC class I-associated antigens in pancreatic cancer

Pan-cancer proteogenomics characterization of tumor immunity

The HLA-II immunopeptidome of SARS-CoV-2

1040-B Identifying tumor-associated antigens in different stages of multiple myeloma using low input HLA immunopeptidomics

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry

What can Ribo-seq and proteomics tell us about the non-canonical proteome?

Karl R. Clauser Information

University

Position

Principal Research Scientist, Broad Institute of MIT and Harvard

Citations(all)

22948

Citations(since 2020)

12479

Cited By

14727

hIndex(all)

71

hIndex(since 2020)

52

i10Index(all)

99

i10Index(since 2020)

88

Email

University Profile Page

Harvard University

Google Scholar

View Google Scholar Profile

Karl R. Clauser Skills & Research Interests

Proteogenomics

Immunopeptidomics

Extracellular Matrix

Novel unannotated ORFs

Spectrum Mill MS/MS software

Top articles of Karl R. Clauser

Title

Journal

Author(s)

Publication Date

Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma

Molecular Cell

Damon A Hofman

Jorge Ruiz-Orera

Ian Yannuzzi

Rakesh Murugesan

Adam Brown

...

2024/1/18

Abstract A038: Non-canonical MHC class I-associated antigens in pancreatic cancer

Cancer Research

Zackery A Ely

Zachary J Kulstad

Eva K Verzani

Jennifer G Abelin

Sudarsana Addepalli

...

2024/1/16

Pan-cancer proteogenomics characterization of tumor immunity

Cell

Francesca Petralia

Weiping Ma

Tomer M Yaron

Francesca Pia Caruso

Nicole Tignor

...

2024/2/12

The HLA-II immunopeptidome of SARS-CoV-2

Cell reports

Shira Weingarten-Gabbay

Da-Yuan Chen

Siranush Sarkizova

Hannah B Taylor

Matteo Gentili

...

2024/1/23

1040-B Identifying tumor-associated antigens in different stages of multiple myeloma using low input HLA immunopeptidomics

Gabrielle M Hernandez

Hannah Taylor

Eva K Verzani

Claudia Ctortecka

David A Berrios Nolasco

...

2023/11/1

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

Cell

Yifat Geffen

Shankara Anand

Yo Akiyama

Tomer M Yaron

Yizhe Song

...

2023/8/31

Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry

Molecular & Cellular Proteomics

Kshiti Meera Phulphagar

Claudia Ctortecka

Alvaro Sebastian Vaca Jacome

Susan Klaeger

Eva K Verzani

...

2023/6/1

What can Ribo-seq and proteomics tell us about the non-canonical proteome?

Biorxiv

John R Prensner

Jennifer G Abelin

Leron W Kok

Karl R Clauser

Jonathan M Mudge

...

2023/5/18

Deep learning integrates histopathology and proteogenomics at a pan-cancer level

Cell Reports Medicine

Joshua M Wang

Runyu Hong

Elizabeth G Demicco

Jimin Tan

Rossana Lazcano

...

2023/9/19

Proteogenomic data and resources for pan-cancer analysis

Yize Li

Yongchao Dou

Felipe Da Veiga Leprevost

Yifat Geffen

Anna P Calinawan

...

2023/8/14

Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues

Nature Communications

Jennifer G Abelin

Erik J Bergstrom

Keith D Rivera

Hannah B Taylor

Susan Klaeger

...

2023/4/3

Systematic Prediction of Minor Histocompatibility Antigens to Inform GvHD Outcomes after Allogeneic Stem Cell Transplantation

Blood

Nicoletta Cieri

Nidhi Hookeri

Kari Stromhaug

Liang Li

Julia Keating

...

2023/11/28

Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

Cancer cell

Wen-Wei Liang

Rita Jui-Hsien Lu

Reyka G Jayasinghe

Steven M Foltz

Eduard Porta-Pardo

...

2023/9/11

HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery

Immunity

Martin Stražar

Jihye Park

Jennifer G Abelin

Hannah B Taylor

Thomas K Pedersen

...

2023/7/11

The HLA-II immunopeptidome of SARS-CoV-2 (preprint)

Shira Weingarten-Gabbay

Da-Yuan Chen

Siranush Sarkizova

Hannah B Taylor

Matteo Gentili

...

2023

An Analytic Framework for the Prediction of Gvl Minor Histocompatibility Antigens to Prevent or Treat Post-Transplant Relapse

Blood

Nicoletta Cieri

Liang Li

Nidhi Hookeri

Kari Stromhaug

Julia Keating

...

2023/11/28

What can ribo-seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?

Molecular & Cellular Proteomics

John R Prensner

Jennifer G Abelin

Leron W Kok

Karl R Clauser

Jonathan M Mudge

...

2023/9/1

Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors …

Cancer Research

Noor Jailkhani

Karl R Clauser

Howard H Mak

Steffen Rickelt

Chenxi Tian

...

2023/6/15

Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling

bioRxiv

Shira Weingarten-Gabbay

Matthew R Bauer

Alexandra C Stanton

Susan Klaeger

Eva K Verzani

...

2023

1408 Non-canonical peptide sources broaden the landscape of targetable antigens in pancreatic cancer

Zackery A Ely

Zachary J Kulstad

Jennifer G Abelin

Eva K Verzani

Sudarsana Addepalli

...

2023/11/1

See List of Professors in Karl R. Clauser University(Harvard University)

Co-Authors

H-index: 106
Pavel Pevzner

Pavel Pevzner

University of California, San Diego

H-index: 60
D R Mani

D R Mani

Harvard University

H-index: 52
Nuno Bandeira

Nuno Bandeira

University of California, San Diego

H-index: 42
Derin Keskin

Derin Keskin

Harvard University

H-index: 30
Alexandra Naba

Alexandra Naba

University of Illinois at Chicago

H-index: 23
Susan Klaeger

Susan Klaeger

Harvard University

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