Jeffrey J. Gray
Johns Hopkins University
H-index: 61
North America-United States
Top articles of Jeffrey J. Gray
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Flexible protein–protein docking with a multitrack iterative transformer | Protein Science | Lee‐Shin Chu Jeffrey A Ruffolo Ameya Harmalkar Jeffrey J Gray | 2024/2 |
Implicit model to capture electrostatic features of membrane environment | PLOS Computational Biology | Rituparna Samanta Jeffrey J Gray | 2024/1/22 |
FLAb: Benchmarking deep learning methods for antibody fitness prediction | bioRxiv | Michael Chungyoun Jeffrey A Ruffolo Jeffrey J Gray | 2024 |
Thermostability Enhancement of GH 62 α-l-Arabinofuranosidase by Directed Evolution and Rational Design | Journal of Agricultural and Food Chemistry | Manoela Martins Alberto M Dos Santos Clauber HS da Costa Samuel W Canner Michael Chungyoun | 2024/2/14 |
Structure-based neural network predictions of protein-carbohydrate interactions | Biophysical Journal | Samuel W Canner Sudhanshu Shanker Jeffrey J Gray | 2024/2/8 |
Virtually the same? Evaluating the effectiveness of remote undergraduate research experiences | CBE—Life Sciences Education | Riley A Hess Olivia A Erickson Rebecca B Cole Jared M Isaacs Silvia Alvarez-Clare | 2023 |
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies | Nature communications | Jeffrey A Ruffolo Lee-Shin Chu Sai Pooja Mahajan Jeffrey J Gray | 2023/4/25 |
Corrigendum to “Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using … | Heliyon | Nancy E Hernandez Wojciech Jankowski Rahel Frick Simon P Kelow Joseph H Lubin | 2023/8/1 |
Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign … | Heliyon | Nancy E Hernandez Wojciech Jankowski Rahel Frick Simon P Kelow Joseph H Lubin | 2023/4/1 |
Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange | bioRxiv | Ameya Harmalkar Sergey Lyskov Jeffrey J Gray | 2023/7/29 |
Towards generalizable prediction of antibody thermostability using machine learning on sequence and structure features | Biophysical journal | Ameya Uddhav Harmalkar Jeffrey J Gray Kathy Wei | 2023/2/10 |
Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features | Mabs | Ameya Harmalkar Roshan Rao Yuxuan Richard Xie Jonas Honer Wibke Deisting | 2023/12/31 |
Contextual protein and antibody encodings from equivariant graph transformers | bioRxiv | Sai Pooja Mahajan Jeffrey A Ruffolo Jeffrey J Gray | 2023/7/17 |
De novo design and Rosetta‐based assessment of high‐affinity antibody variable regions (Fv) against the SARS‐CoV‐2 spike receptor binding domain (RBD) | Proteins: Structure, Function, and Bioinformatics | Veda Sheersh Boorla Ratul Chowdhury Ranjani Ramasubramanian Brandon Ameglio Rahel Frick | 2023/2 |
Structure-based neural network protein–carbohydrate interaction predictions at the residue level | Frontiers in Bioinformatics | Samuel W Canner Sudhanshu Shanker Jeffrey J Gray | 2023/6/20 |
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment | Proteins: Structure, Function, and Bioinformatics | Marc F Lensink Guillaume Brysbaert Nessim Raouraoua Paul A Bates Marco Giulini | 2023/12 |
Enhancement of antibody thermostability and affinity by computational design in the absence of antigen | bioRxiv | Mark Hutchinson Jeffrey A Ruffolo Nantaporn Haskins Michael Iannotti Giuliana Vozza | 2023 |
AI models for protein design are driving antibody engineering | Michael Chungyoun Jeffrey J Gray | 2023/5/26 | |
IgLM: Infilling language modeling for antibody sequence design | Cell Systems | Richard W Shuai Jeffrey A Ruffolo Jeffrey J Gray | 2023/11/15 |
“How do we do this at a distance?!” A descriptive study of remote undergraduate research programs during COVID-19 | CBE—Life Sciences Education | Olivia A Erickson Rebecca B Cole Jared M Isaacs Silvia Alvarez-Clare Jonathan Arnold | 2022 |
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