Fengzhu Sun
University of Southern California
H-index: 61
North America-United States
Top articles of Fengzhu Sun
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Comparison of the effectiveness of different normalization methods for metagenomic cross-study phenotype prediction under heterogeneity | Scientific Reports | Beibei Wang Fengzhu Sun Yihui Luan | 2024/3/25 |
Effective binning of metagenomic contigs using contrastive multi-view representation learning | Nature Communications | Ziye Wang Ronghui You Haitao Han Wei Liu Fengzhu Sun | 2024/1/17 |
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data | Nature Communications | Yuxuan Du Fengzhu Sun | 2023/10/6 |
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data | Nature Communications | Yuxuan Du Jed A Fuhrman Fengzhu Sun | 2023/1/31 |
GUT METABOLOMIC PROFILES IN PEDIATRIC ULCERATIVE COLITIS PATIENTS PRIOR TO AND AFTER RECEIVING FECAL MICROBIOTA TRANSPLANTS | Gut Microbiome | Parastou S Khalessi Hosseini Beibei Wang Yihui Luan Fengzhu Sun Sonia Michail | 2023/1 |
MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities | Genome Biology | Ziye Wang Pingqin Huang Ronghui You Fengzhu Sun Shanfeng Zhu | 2023/1/6 |
Identifying local associations in biological time series: algorithms, statistical significance, and applications | Dongmei Ai Lulu Chen Jiemin Xie Longwei Cheng Fang Zhang | 2023/11/1 | |
Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies | PLOS Computational Biology | Yilin Gao Fengzhu Sun | 2023/10/16 |
A Model-based Approach to Assess Reproducibility for Large-scale High-throughput MRI-based Studies | NeuroImage | Zeyu Jiao Yinglei Lai Jujiao Kang Weikang Gong Liang Ma | 2022/7/15 |
HiFine: integrating Hi-c-based and shotgun-based methods to reFine binning of metagenomic contigs | Bioinformatics | Yuxuan Du Fengzhu Sun | 2022/4/28 |
Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer | Nature communications | Mary L Stackpole Weihua Zeng Shuo Li Chun-Chi Liu Yonggang Zhou | 2022/9/29 |
HiCBin: Binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps | Genome Biology | Yuxuan Du Fengzhu Sun | 2022/2/28 |
A New Context Tree Inference Algorithm for Variable Length Markov Chain Model with Applications to Biological Sequence Analyses | Journal of Computational Biology | Shaokun An Jie Ren Fengzhu Sun Lin Wan | 2022/4/22 |
AC-PCoA: Adjustment for confounding factors using principal coordinate analysis | PLOS Computational Biology | Yu Wang Fengzhu Sun Wei Lin Shuqin Zhang | 2022/7/13 |
HiCzin: Normalizing metagenomic Hi-C data and detecting spurious contacts using zero-inflated negative binomial regression | bioRxiv | Yuxuan Du Sarah M Laperriere Jed Fuhrman Fengzhu Sun | 2021/3/2 |
16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis | Scientific Reports | Wenxuan Zuo Beibei Wang Xin Bai Yihui Luan Yingying Fan | 2022/4/19 |
Phage–bacterial contig association prediction with a convolutional neural network | Bioinformatics | Tianqi Tang Shengwei Hou Jed A Fuhrman Fengzhu Sun | 2022/7/1 |
Metagenomic Analyses of Multiple Gut Datasets Revealed the Association of Phage Signatures in Colorectal Cancer | Frontiers in Cellular and Infection Microbiology | Wenxuan Zuo Sonia Michail Fengzhu Sun | 2022 |
MLR-OOD: a Markov chain based Likelihood Ratio method for Out-Of-Distribution detection of genomic sequences | Journal of molecular biology | Xin Bai Jie Ren Fengzhu Sun | 2022/8/15 |
Michael Waterman's Contributions to Computational Biology and Bioinformatics | Journal of Computational Biology | Pavel Pevzner Martin Vingron Christian Reidys Fengzhu Sun Sorin Istrail | 2022/6/21 |
Co-Authors
