Can Alkan
Bilkent Üniversitesi
H-index: 65
Asia-Turkey
Top articles of Can Alkan
GateKeeper-GPU: Fast and accurate pre-alignment filtering in short read mapping
IEEE Transactions on Computers
2024/2/14
An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data
Computers in Biology and Medicine
2024/2/1
Can Alkan
H-Index: 45
ECOLE: Learning to call copy number variants on whole exome sequencing data
Nature Communications
2024/1/2
Can Alkan
H-Index: 45
Pairwise sequence alignment with block and character edit operations
arXiv preprint arXiv:2311.11082
2023/11/18
Can Alkan
H-Index: 45
GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping
arXiv preprint arXiv:2309.17063
2023/9/29
Gagandeep Singh
H-Index: 10
Can Alkan
H-Index: 45
Identification of protein–protein interaction bridges for multiple sclerosis
Bioinformatics
2023/4
Can Alkan
H-Index: 45
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis
arXiv
2021
Pre-processing of paleogenomes: Mitigating reference bias and postmortem damage in ancient genome data
bioRxiv
2023
CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data
PLOS Computational Biology
2022/12/14
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
arXiv preprint arXiv:2212.04953
2022/12/9
FastRemap: a tool for quickly remapping reads between genome assemblies
Bioinformatics
2022/10/1
Damla Senol Cali
H-Index: 6
Can Alkan
H-Index: 45
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
Cell
2022/9/1
CoViT: Real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers
arXiv preprint arXiv:2208.05004
2022/8/9
Can Alkan
H-Index: 45
Leonid Yavits
H-Index: 15
Polishing copy number variant calls on exome sequencing data via deep learning
Genome research
2022/6/1
Furkan Özden
H-Index: 0
Can Alkan
H-Index: 45
Implications of the first complete human genome assembly
Genome research
2022/3/31
Technology dictates algorithms: recent developments in read alignment
2021/8/26
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies
2021
Can Alkan
H-Index: 45
Ibrahim Numanagić
H-Index: 10
A robust benchmark for detection of germline large deletions and insertions (Jun, 10.1038/s41587-020-0538-8, 2020)
Nature biotechnology
2020/11
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
2020/10/17
Accelerating Genome Analysis: A Primer on an Ongoing Journey
IEEE Micro
2020/8/3
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