Benjamin M. Gyori, Ph.D.
Harvard University
H-index: 16
North America-United States
Top articles of Benjamin M. Gyori, Ph.D.
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange | Bioinformatics | Rudolf T Pillich Jing Chen Christopher Churas Dylan Fong Benjamin M Gyori | 2023/3/1 |
The Human Phenotype Ontology in 2024: phenotypes around the world | Nucleic Acids Research | Francisco Castellanos J Caufield Lauren Chan Christopher Chute Jaime Cruz-Rojo | 2024/1/5 |
Automated assembly of molecular mechanisms at scale from text mining and curated databases | Molecular Systems Biology | John A Bachman Benjamin M Gyori Peter K Sorger | 2023/5/9 |
Drug-Target identification in COVID-19 disease mechanisms using computational systems biology approaches | Frontiers in Immunology | Anna Niarakis Marek Ostaszewski Alexander Mazein Martina Kutmon Marc E Gillespie | 2024/2/13 |
Nociceptor neuroimmune interactomes reveal cell type- and injury-specific inflammatory pain pathways | BioRxiv | Aakanksha Jain Benjamin M Gyori Sara Hakim Samuel Bunga Daniel G Taub | 2023/2/3 |
Democratising Knowledge Representation with BioCypher | Nature Biotechnology | Sebastian Lobentanzer Patrick Aloy Jan Baumbach Balazs Bohar Katharina Danhauser | 2023 |
Prediction and Curation of Missing Biomedical Identifier Mappings with Biomappings | Bioinformatics | Charles Tapley Hoyt Amelia L Hoyt Benjamin M Gyori | 2023/4/1 |
A Simple Standard for Sharing Ontological Mappings (SSSOM) | Database | Nicolas Matentzoglu James P Balhoff Susan M Bello Chris Bizon Matthew Brush | 2022/12/26 |
ChemicalX: A Deep Learning Library for Drug Pair Scoring | Benedek Rozemberczki Charles Tapley Hoyt Anna Gogleva Piotr Grabowski Klas Karis | 2022/8/14 | |
A Unified Framework for Rank-based Evaluation Metrics for Link Prediction in Knowledge Graphs | arXiv preprint arXiv:2203.07544 | Charles Tapley Hoyt Max Berrendorf Mikhail Galkin Volker Tresp Benjamin M Gyori | 2022/3/14 |
PyBioPAX: biological pathway exchange in Python | Journal of open source software | Benjamin M Gyori Charles Tapley Hoyt | 2022 |
STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs | Bioinformatics | Helena Balabin Charles Tapley Hoyt Colin Birkenbihl Benjamin M Gyori John Bachman | 2022/3/15 |
Unifying the Identification of Biomedical Entities with the Bioregistry | Scientific data | Charles Tapley Hoyt Meghan Balk Tiffany J Callahan Daniel Domingo-Fernández Melissa A Haendel | 2022/11/19 |
Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes | Elife | Laura M Doherty Caitlin E Mills Sarah A Boswell Xiaoxi Liu Charles Tapley Hoyt | 2022/6/23 |
A roadmap for the functional annotation of protein families: a community perspective | Database | Valérie de Crécy-Lagard Rocio Amorin de Hegedus Cecilia Arighi Jill Babor Alex Bateman | 2022/12/26 |
ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs | Helena Balabin Charles Tapley Hoyt Benjamin M Gyori John Bachman Martin Hofmann-Apitius | 2022/4/21 | |
Assembling a phosphoproteomic knowledge base using ProtMapper to normalize phosphosite information from databases and text mining | BioRxiv | John A Bachman Benjamin M Gyori Peter K Sorger | 2019/10/29 |
Gilda: biomedical entity text normalization with machine-learned disambiguation as a service | Bioinformatics Advances | Benjamin M Gyori Charles Tapley Hoyt Albert Steppi | 2022/5/11 |
Automated Network Assembly of Mechanistic Literature for Informed Evidence Identification to Support Cancer Risk Assessment | Environmental Health Perspectives | Bernice Scholten Laura Guerrero Simón Shaji Krishnan Roel Vermeulen Anjoeka Pronk | 2022/3/3 |
A self-updating causal model of COVID-19 mechanisms built from the scientific literature | BioCreative VII Challenge Evaluation Workshop, Virtual workshop | Benjamin M Gyori John A Bachman Diana Kolusheva | 2021/10/8 |
Co-Authors
