Yasubumi Sakakibara

About Yasubumi Sakakibara

Yasubumi Sakakibara, With an exceptional h-index of 39 and a recent h-index of 22 (since 2020), a distinguished researcher at Keio University, specializes in the field of Bioinformatics, Machine Learning.

His recent articles reflect a diverse array of research interests and contributions to the field:

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine

Deep learning of multimodal networks with topological regularization for drug repositioning

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity

Quantum algorithm for position weight matrix matching

Deep generative model of constructing chemical latent space for large molecular structures with 3D complexity

Automatic Detection and Measurement of Renal Cysts in Ultrasound Images: A Deep Learning Approach

プライバシー保護技術を用いた遺伝子発現差異解析

Development of a novel PKC ligand using machine learning model: synthesis and PKC surrogate binding of the simplified analogues of alotaketals

Yasubumi Sakakibara Information

University

Position

Biosciences and Informatics

Citations(all)

6382

Citations(since 2020)

2038

Cited By

5041

hIndex(all)

39

hIndex(since 2020)

22

i10Index(all)

90

i10Index(since 2020)

40

Email

University Profile Page

Google Scholar

Yasubumi Sakakibara Skills & Research Interests

Bioinformatics

Machine Learning

Top articles of Yasubumi Sakakibara

Title

Journal

Author(s)

Publication Date

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine

Msystems

Mika Uehara

Takashi Inoue

Sumitaka Hase

Erika Sasaki

Atsushi Toyoda

...

2024/4/1

Deep learning of multimodal networks with topological regularization for drug repositioning

Yuto Ohnuki

Manato Akiyama

Yasubumi Sakakibara

2024/1/10

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity

Communications Chemistry

Toshiki Ochiai

Tensei Inukai

Manato Akiyama

Kairi Furui

Masahito Ohue

...

2023/11/16

Quantum algorithm for position weight matrix matching

IEEE Transactions on Quantum Engineering

Koichi Miyamoto

Naoki Yamamoto

Yasubumi Sakakibara

2023/7/10

Deep generative model of constructing chemical latent space for large molecular structures with 3D complexity

Toshiki Ochiai

Tensei Inukai

Manato Akiyama

Kairi Furui

Masahito Ohue

...

2023/5/29

Automatic Detection and Measurement of Renal Cysts in Ultrasound Images: A Deep Learning Approach

Healthcare

Yurie Kanauchi

Masahiro Hashimoto

Naoki Toda

Saori Okamoto

Hasnine Haque

...

2023/2/7

プライバシー保護技術を用いた遺伝子発現差異解析

情報処理学会研究報告 (Web)

KAITO KAWAGUCHI

YASUBUMI SAKAKIBARA

KENGO SATO

2023

Development of a novel PKC ligand using machine learning model: synthesis and PKC surrogate binding of the simplified analogues of alotaketals

Jumpei Maki

Asami Oshimura

Chihiro Tsukano

Ryo Yanagita

Yutaka Saito

...

2022/5/6

Direct inference of base-pairing probabilities with neural networks improves prediction of RNA secondary structures with pseudoknots

Genes

Manato Akiyama

Yasubumi Sakakibara

Kengo Sato

2022/11/18

Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning

NAR genomics and bioinformatics

Manato Akiyama

Yasubumi Sakakibara

2022/3/1

Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine

Msystems

Mika Uehara

Takashi Inoue

Minori Kominato

Sumitaka Hase

Erika Sasaki

...

2022/10/26

Development and preliminary validation of a machine learning system for thyroid dysfunction diagnosis based on routine laboratory tests

Communications Medicine

Min Hu

Chikashi Asami

Hiroshi Iwakura

Yasuyo Nakajima

Ryousuke Sema

...

2022/1/19

Graph kernels encoding features of all subgraphs by quantum superposition

IEEE Journal on Emerging and Selected Topics in Circuits and Systems

Kaito Kishi

Takahiko Satoh

Rudy Raymond

Naoki Yamamoto

Yasubumi Sakakibara

2022/8/30

A comparison of bioinformatics pipelines for enrichment Illumina next generation sequencing Systems in Detecting SARS-CoV-2 virus strains

Genes

Afiahayati

Stefanus Bernard

Gunadi

Hendra Wibawa

Mohamad Saifudin Hakim

...

2022/7/26

AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity

Chemical Communications

Jumpei Maki

Asami Oshimura

Chihiro Tsukano

Ryo C Yanagita

Yutaka Saito

...

2022/6/9

Informative RNA-base embedding for functional RNA structural alignment and clustering by deep representation learning

bioRxiv

Manato Akiyama

Yasubumi Sakakibara

2021/8/24

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation

Nucleic acids research

Kyoko Ishino

Hidetoshi Hasuwa

Jun Yoshimura

Yuka W Iwasaki

Hidenori Nishihara

...

2021/3/18

Performance of a deep learning-based identification system for esophageal cancer from CT images

Esophagus

Masashi Takeuchi

Takumi Seto

Masahiro Hashimoto

Nao Ichihara

Yosuke Morimoto

...

2021/7

RNA secondary structure prediction using deep learning with thermodynamic integration

Nature communications

Kengo Sato

Manato Akiyama

Yasubumi Sakakibara

2021/2/11

Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset

Scientific Data

Vasanthan Jayakumar

Osamu Nishimura

Mitsutaka Kadota

Naoki Hirose

Hiromi Sano

...

2021/6/28

See List of Professors in Yasubumi Sakakibara University(Keio University)