Vincent Gardeux

Vincent Gardeux

École Polytechnique Fédérale de Lausanne

H-index: 21

Europe-Switzerland

About Vincent Gardeux

Vincent Gardeux, With an exceptional h-index of 21 and a recent h-index of 15 (since 2020), a distinguished researcher at École Polytechnique Fédérale de Lausanne, specializes in the field of Bioinformatics, Data analysis, Machine learning, Optimization.

His recent articles reflect a diverse array of research interests and contributions to the field:

Dissecting reprogramming heterogeneity at single-cell resolution using scTF-seq

Non-coding variants impact cis-regulatory coordination in a cell type-specific manner

Context transcription factors establish cooperative environments and mediate enhancer communication

Optimised set of oligonucleotides for bulk rna barcoding and sequencing

Transcriptomic profiling of murine GnRH neurons reveals developmental trajectories linked to human reproduction

A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion

DGRPool: A web tool leveraging harmonized Drosophila Genetic Reference Panel phenotyping data for the study of complex traits

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

Vincent Gardeux Information

University

Position

Senior Scientist at

Citations(all)

1885

Citations(since 2020)

1463

Cited By

796

hIndex(all)

21

hIndex(since 2020)

15

i10Index(all)

32

i10Index(since 2020)

25

Email

University Profile Page

École Polytechnique Fédérale de Lausanne

Google Scholar

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Vincent Gardeux Skills & Research Interests

Bioinformatics

Data analysis

Machine learning

Optimization

Top articles of Vincent Gardeux

Title

Journal

Author(s)

Publication Date

Dissecting reprogramming heterogeneity at single-cell resolution using scTF-seq

bioRxiv

Wangjie Liu

Wouter Saelens

Pernille Rainer

Marjan Biocanin

Vincent Gardeux

...

2024

Non-coding variants impact cis-regulatory coordination in a cell type-specific manner

bioRxiv

Olga Pushkarev

Guido van Mierlo

Judith Franziska Kribelbauer

Wouter Saelens

Vincent Gardeux

...

2023

Context transcription factors establish cooperative environments and mediate enhancer communication

bioRxiv

Judith F Kribelbauer

Olga Pushkarev

Vincent Gardeux

Julie Russeil

Guido van Mierlo

...

2023

Optimised set of oligonucleotides for bulk rna barcoding and sequencing

Riccardo Dainese

Daniel Alpern

Vincent Gardeux

Bart Deplancke

2023

Transcriptomic profiling of murine GnRH neurons reveals developmental trajectories linked to human reproduction

bioRxiv

Yassine Zouaghi

Daniel Alpern

Vincent Gardeux

Julie Russeil

Bart Deplancke

...

2023/6/23

A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion

bioRxiv

Radiana Ferrero

Pernille Rainer

Julie Russeil

Magda Zachara

Joern Pezoldt

...

2023

DGRPool: A web tool leveraging harmonized Drosophila Genetic Reference Panel phenotyping data for the study of complex traits

bioRxiv

Vincent Gardeux

Roel PJ Bevers

Fabrice PA David

Emily Rosschaert

Romain Rochepeau

...

2023

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

Nature Communications

Gerard Llimos

Vincent Gardeux

Ute Koch

Judith F Kribelbauer

Antonina Hafner

...

2022/4/19

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Science

Hongjie Li

Jasper Janssens

Maxime De Waegeneer

Sai Saroja Kolluru

Kristofer Davie

...

2022/3/4

Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition

Nature Methods

Johannes Bues

Marjan Biočanin

Joern Pezoldt

Riccardo Dainese

Antonius Chrisnandy

...

2022/3

2013–A LABEL-FREE, HIGH-THROUGHPUT PHENOTYPIC SCREEN OF ADIPOCYTIC DIFFERENTIATION MODULATORS TO ACCELERATE HEMATOPOIETIC RECOVERY

Experimental Hematology

Olaia Naveiras

Frederica Schyrr

Vasco Campos

Alejandro Alonso-Calleja

Benoit von der Weid

...

2022/1/1

Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets

Nature Communications

Joern Pezoldt

Carolin Wiechers

Mangge Zou

Maria Litovchenko

Marjan Biocanin

...

2022/11/24

Live-seq enables temporal transcriptomic recording of single cells

Nature

Wanze Chen

Orane Guillaume-Gentil

Pernille Yde Rainer

Christoph G Gäbelein

Wouter Saelens

...

2022/8/25

Extensive tissue-specific expression variation and novel regulators underlying circadian behavior

Science advances

Maria Litovchenko

Antonio CA Meireles-Filho

Michael V Frochaux

Roel PJ Bevers

Alessio Prunotto

...

2021/1/29

Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium

PLoS biology

Philip V’kovski

Mitra Gultom

Jenna N Kelly

Silvio Steiner

Julie Russeil

...

2021/3/29

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo

BMC biology

Jialin Liu

Michael Frochaux

Vincent Gardeux

Bart Deplancke

Marc Robinson-Rechavi

2020/12

cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel

Genome biology

Michael V Frochaux

Maroun Bou Sleiman

Vincent Gardeux

Riccardo Dainese

Brian Hollis

...

2020/12

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses

Nucleic acids research

Fabrice PA David

Maria Litovchenko

Bart Deplancke

Vincent Gardeux

2020/7/2

A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors

Proceedings of the National Academy of Sciences

Riccardo Dainese

Vincent Gardeux

Gerard Llimos

Daniel Alpern

Jia Yuan Jiang

...

2020/6/16

See List of Professors in Vincent Gardeux University(École Polytechnique Fédérale de Lausanne)

Co-Authors

H-index: 62
Bart Deplancke

Bart Deplancke

École Polytechnique Fédérale de Lausanne

H-index: 21
Wouter Saelens

Wouter Saelens

École Polytechnique Fédérale de Lausanne

H-index: 13
Wanze Chen

Wanze Chen

École Polytechnique Fédérale de Lausanne

H-index: 13
Jörn Pezoldt

Jörn Pezoldt

École Polytechnique Fédérale de Lausanne

H-index: 10
Maria Litovchenko

Maria Litovchenko

University College London

H-index: 10
Daniel Alpern

Daniel Alpern

École Polytechnique Fédérale de Lausanne

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