Tomas Helikar
University of Nebraska-Lincoln
H-index: 25
North America-United States
Top articles of Tomas Helikar
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches | Frontiers in Immunology | Anna Niarakis Marek Ostaszewski Alexander Mazein Martina Kutmon Marc E Gillespie | 2024/2/13 |
Augusta: From RNA‐Seq to gene regulatory networks and Boolean models | Computational and Structural Biotechnology Journal | Jana Musilova Zdenek Vafek Bhanwar Lal Puniya Ralf Zimmer Tomas Helikar | 2024/12/1 |
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5 | Journal of integrative bioinformatics | Lucian P Smith Frank T Bergmann Alan Garny Tomáš Helikar Jonathan Karr | 2024/4/15 |
Toward mechanistic medical digital twins: some use cases in immunology | Reinhard Laubenbacher Fred Adler Gary An Filippo Castiglione Stephen Eubank | 2024/3/7 | |
Forum on immune digital twins: a meeting report | Reinhard Laubenbacher Fred Adler Gary An Filippo Castiglione Stephen Eubank | 2024/2/16 | |
A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery | The Journal of Immunology | Rada Amin Sara Sadat Aghamiri Bhanwar Lal Puniya Tomáš Helikar | 2023/5/1 |
Modeling Immunological Networks in an Educational Setting using Cell Collective | The Journal of Immunology | Rebekah Taylor Sumali Pandey Louis B Justement Tomas Helikar | 2023/5/1 |
COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery | Briefings in Bioinformatics | Brandt Bessell Josh Loecker Zhongyuan Zhao Sara Sadat Aghamiri Sabyasachi Mohanty | 2023/11/1 |
Factors Influencing Instructors’ Adoption and Continued Use of Computing Science Technologies: A Case Study in the Context of Cell Collective | CBE—Life Sciences Education | Changsoo Song Resa Helikar Wendy M Smith Tomáš Helikar | 2023 |
Modeling and Remodeling the Cell: How Digital Twins and HCMV Can Elucidate the Complex Interactions of Viral Latency, Epigenetic Regulation, and Immune Responses | Hana McMahon-Cole Alicia Johnson Sara Sadat Aghamiri Tomáš Helikar Lindsey B Crawford | 2023/9 | |
A review of radiation-induced alterations of multi-omic profiles, radiation injury biomarkers, and countermeasures | Sushil K Shakyawar Nitish K Mishra Neetha N Vellichirammal Lynnette Cary Tomáš Helikar | 2023/1/1 | |
A computational pipeline for drug discovery in immunometabolism against autoimmune diseases | The Journal of Immunology | Bhanwar Lal Puniya Brandt Bessell Zhongyuan Zhao Josh Loecker Sara Sadat Aghamiri | 2023/5/1 |
Identification of Novel Immunosuppressive Drug Targets for Liver Transplantation Using Genome-Scale Metabolic Modeling | The Journal of Immunology | Sara Sadat Aghamiri Bhanwar Lal Puniya Rada Amin Daryl J Murry Tomáš Helikar | 2023/5/1 |
Recent applications of quantitative systems pharmacology and machine learning models across diseases | Sara Sadat Aghamiri Rada Amin Tomáš Helikar | 2022/2/1 | |
Revision as an essential step in modeling to support predicting, observing, and explaining cellular respiration system dynamics | International Journal of Science Education | Lyrica Lucas Tomáš Helikar Joseph Dauer | 2022/9/2 |
Fish Oil Intake During Gestation and Lactation Attenuated STZ-Induced Diabetes in Male Offspring via Activation of Brown Fat and Modulating Oxylipin Profile | Current Developments in Nutrition | Rong Fan Shalom Thomas Mikyoung You Zhuoheng Li Brandt Bessell | 2022/6/1 |
DBERlibR: Automated Data Analysis for Discipline-Based Education Research | bioRxiv | Changsoo Song Resa Helikar Wendy M Smith Tomáš Helikar | 2022/8/26 |
Supporting university student learning of complex systems: an example of teaching the interactive processes that constitute photosynthesis | Joseph Dauer Jenny Dauer Lyrica Lucas Tomáš Helikar Tammy Long | 2022/5/26 | |
The effects of a modeling and computational thinking professional development program on STEM educators’ perceptions toward teaching science and engineering practices | Education Sciences | Blake C Colclasure Tessa Durham Brooks Tomáš Helikar Scott J King Audrey Webb | 2022/8/21 |
Building digital twins of the human immune system: toward a roadmap | Reinhard Laubenbacher Anna Niarakis Tomáš Helikar Gary An Bruce Shapiro | 2022/5/20 |
Co-Authors
