Thomas D. Otto
University of Glasgow
H-index: 63
Europe-United Kingdom
Top articles of Thomas D. Otto
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A novel computational pipeline for var gene expression augments the discovery of changes in the Plasmodium falciparum transcriptome during transition from in vivo to short-term … | Elife | Clare Andradi-Brown Jan Stephan Wichers-Misterek Heidrun von Thien Yannick D Höppner Judith AM Scholz | 2024/1/25 |
Annotation and visualisation of parasite, fungi and arthropod genomes with Companion | bioRxiv | William Haese-Hill Kathryn Crouch Thomas D Otto | 2024 |
Spatial transcriptomics reveals focal induction of molecular responses and cellular interactions in the small intestine during Heligmosomoides polygyrus infection. | bioRxiv | Marta Campillo Poveda Ross F Laidlaw Olympia Hardy Thomas D Otto Rick M Maizels | 2024 |
Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics | Elife | Emma M Briggs Catarina A Marques Guy R Oldrieve Jihua Hu Thomas D Otto | 2023/5/11 |
From contigs towards chromosomes: automatic improvement of long read assemblies (ILRA) | Briefings in Bioinformatics | José Luis Ruiz Susanne Reimering Juan David Escobar-Prieto Nicolas MB Brancucci Diego F Echeverry | 2023/7 |
Sterile protection against P. vivax malaria by repeated blood stage infection in the Aotus monkey model | Life Science Alliance | Nicanor Obaldía Joao Luiz Da Silva Filho Marlon Núñez Katherine A Glass Tate Oulton | 2024/3/1 |
New technologies to study helminth development and host-parasite interactions | Collette Britton Roz Laing Tom N McNeilly Matias G Perez Thomas D Otto | 2023/3/16 | |
The exception that proves the rule: Virulence gene expression at the onset of Plasmodium falciparum blood stage infections | PLoS Pathogens | Jan Stephan Wichers-Misterek Ralf Krumkamp Jana Held Heidrun von Thien Irene Wittmann | 2023/6/29 |
Spatially resolved single-cell atlas of the lung in fatal Covid19 in an African population reveals a distinct cellular signature and an interferon gamma dominated response | bioRxiv | James Nyirenda Olympia Hardy João Da Silva Filho Vanessa Herder Charalampos Attipa | 2023/11/17 |
peaks2utr: a robust Python tool for the annotation of 3′ UTRs | Bioinformatics | William Haese-Hill Kathryn Crouch Thomas D Otto | 2023/3/1 |
Phenotypic Screens Identify Genetic Factors Associated with Gametocyte Development in the Human Malaria Parasite Plasmodium falciparum | Microbiology Spectrum | Jyotsna Chawla Ilana Goldowitz Jenna Oberstaller Min Zhang Camilla Valente Pires | 2023/6/15 |
MalariaSED: a deep learning framework to decipher the regulatory contributions of noncoding variants in malaria parasites | Genome Biology | Chengqi Wang Yibo Dong Chang Li Jenna Oberstaller Min Zhang | 2023/10/16 |
Chemogenomic profiling of a Plasmodium falciparum transposon mutant library reveals shared effects of dihydroartemisinin and bortezomib on lipid metabolism and exported proteins | Microbiology Spectrum | Camilla Valente Pires Jenna Oberstaller Chengqi Wang Debora Casandra Min Zhang | 2023/6/15 |
Protein KIC5 is a novel regulator of artemisinin stress response in the malaria parasite Plasmodium falciparum | Scientific Reports | Caroline F Simmons Justin Gibbons Min Zhang Jenna Oberstaller Camilla Valente Pires | 2023/1/9 |
A novel Modulator of Ring Stage Translation (MRST) gene alters artemisinin sensitivity in Plasmodium falciparum | Msphere | Caroline Simmons Justin Gibbons Chengqi Wang Camilla Valente Pires Min Zhang | 2023/8/24 |
scRNA-Seq reveals elevated interferon responses and TNF-α signaling via NFkB in monocytes in children with uncomplicated malaria | medRxiv | Collins M Morang’a Riley S Drake Vincent N Miao Nancy K Nyakoe Dominic SY Amuzu | 2023/6/5 |
Double-negative-2 B cells are the major synovial plasma cell precursor in rheumatoid arthritis | Frontiers in Immunology | Elinor Wing Catherine Sutherland Katherine Miles David Gray Carl S Goodyear | 2023/8/10 |
Host cell maturation modulates parasite invasion and sexual differentiation in Plasmodium berghei | Science advances | Franziska Hentzschel Matthew P Gibbins Charalampos Attipa Dario Beraldi Christopher A Moxon | 2022/4/27 |
Using topic modeling to detect cellular crosstalk in scRNA-seq | PLOS Computational Biology | Alexandrina Pancheva Helen Wheadon Simon Rogers Thomas D Otto | 2022/4/8 |
Integrative single cell and spatial transcriptomic analysis reveal reciprocal microglia-plasma cell crosstalk in the mouse brain during chronic Trypanosoma brucei infection | bioRxiv | Juan F Quintana Praveena Chandrasegaran Matthew C Sinton Emma Briggs Thomas D Otto | 2022/3/27 |
Co-Authors
