Sushmita Roy
University of Wisconsin-Madison
H-index: 32
North America-United States
Top articles of Sushmita Roy
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
The single-cell transcriptome program of nodule development cellular lineages in Medicago truncatula | Cell Reports | Wendell J Pereira Jade Boyd Daniel Conde Paolo M Triozzi Kelly M Balmant | 2024/2/27 |
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen | bioRxiv | Cristobal Xavier Carrera Carriel Saptarshi Pyne Spencer A Halberg-Spencer Sung Chul Park Hye-won Seo | 2023 |
ISMB/ECCB 2023 proceedings | Yann Ponty Sushmita Roy | 2023/6/1 | |
Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets | Nature Communications | Shilu Zhang Saptarshi Pyne Stefan Pietrzak Spencer Halberg Sunnie Grace McCalla | 2023/5/27 |
Predicting patient-specific enhancer-promoter interactions | Cell Reports Methods | Brittany Baur Sushmita Roy | 2023/9/25 |
Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft | Scientific Reports | Mikhail G Dozmorov Maggie A Marshall Narmeen S Rashid Jacqueline M Grible Aaron Valentine | 2023/4/3 |
Abstract P1-13-23: Carboplatin resistance-associated changes in the 3D chromatin landscape of a triple-negative breast cancer Patient-Derived Xenograft | Cancer Research | Mikhail Dozmorov Maggie Marshall Narmeen Rashid Jacqueline Grible Aaron D Valentine | 2023/3/1 |
Current and future directions in network biology | arXiv preprint arXiv:2309.08478 | Marinka Zitnik Michelle M Li Aydin Wells Kimberly Glass Deisy Morselli Gysi | 2023/9/15 |
Examining dynamics of three-dimensional genome organization with multi-task matrix factorization | bioRxiv | Da-Inn Lee Sushmita Roy | 2023 |
Benchmarking graph representation learning algorithms for detecting modules in molecular networks | F1000Research | Zhiwei Song Brittany Baur Sushmita Roy | 2023/8/7 |
Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen‐fixing clade | New Phytologist | Wendell J Pereira Sara Knaack Sanhita Chakraborty Daniel Conde Ryan A Folk | 2022/4 |
ISMB 2022 proceedings | Bioinformatics | Christophe Dessimoz Sushmita Roy | 2022/7 |
Deciphering the role of 3D genome organization in breast cancer susceptibility | Frontiers in Genetics | Brittany Baur Da-Inn Lee Jill Haag Deborah Chasman Michael Gould | 2022/1/11 |
Evolution of miRNA-Binding Sites and Regulatory Networks in Cichlids | Molecular Biology and Evolution | Tarang K Mehta Luca Penso-Dolfin Will Nash Sushmita Roy Federica Di-Palma | 2022/7 |
Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula | BMC biology | Sara A Knaack Daniel Conde Sanhita Chakraborty Kelly M Balmant Thomas B Irving | 2022/11/9 |
Identifying strengths and weaknesses of methods for computational network inference from single cell RNA-seq data | G3: Genes, Genomes, Genetics | Sunnie Grace McCalla Alireza Fotuhi Siahpirani Jiaxin Li Saptarshi Pyne Matthew Stone | 2023/3/1 |
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks | Genome research | Alireza Fotuhi Siahpirani Sara Knaack Deborah Chasman Morten Seirup Rupa Sridharan | 2022/7/1 |
Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus | Development | Daniel Conde Paolo M Triozzi Wendell J Pereira Henry W Schmidt Kelly M Balmant | 2022/11/1 |
24. Enabling Studies of Genome-Scale Regulatory Network Evolution in Large Phylogenies with MRTLE | Yeast Functional Genomics: Methods and Protocols | Sushmita Roy | 2022/5/6 |
An LCO-responsive homolog of NODULE INCEPTION positively regulates lateral root formation in Populus sp. | Plant Physiology | Thomas B Irving Sanhita Chakraborty Lucas Gontijo Silva Maia Sara Knaack Daniel Conde | 2022/11/1 |
