Srividya Ramakrishnan

Srividya Ramakrishnan

Johns Hopkins University

H-index: 12

North America-United States

About Srividya Ramakrishnan

Srividya Ramakrishnan, With an exceptional h-index of 12 and a recent h-index of 12 (since 2020), a distinguished researcher at Johns Hopkins University, specializes in the field of Computational Biology, bioinformatics, Genomics.

His recent articles reflect a diverse array of research interests and contributions to the field:

Convergent evolution of plant prickles is driven by repeated gene co-option over deep time

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

Srividya Ramakrishnan Information

University

Position

Senior Research Data Analyst Schatz Lab

Citations(all)

2517

Citations(since 2020)

2437

Cited By

725

hIndex(all)

12

hIndex(since 2020)

12

i10Index(all)

14

i10Index(since 2020)

14

Email

University Profile Page

Johns Hopkins University

Google Scholar

View Google Scholar Profile

Srividya Ramakrishnan Skills & Research Interests

Computational Biology

bioinformatics

Genomics

Top articles of Srividya Ramakrishnan

Title

Journal

Author(s)

Publication Date

Convergent evolution of plant prickles is driven by repeated gene co-option over deep time

bioRxiv

James W Satterlee

David Alonso

Pietro Gramazio

Katharine M Jenike

Jia He

...

2024

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.

bioRxiv

Jonathan Cahn

Michael Regulski

Jason Lynn

Evan Ernst

Cristiane de Santis Alves

...

2024

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids

JAC-Antimicrobial Resistance

Patricia J Simner

Yehudit Bergman

Yunfan Fan

Emily B Jacobs

Srividya Ramakrishnan

...

2023/6

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell

Joel Rozowsky

Jiahao Gao

Beatrice Borsari

Yucheng T Yang

Timur Galeev

...

2023/3/30

Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome

The Plant Cell

Jia He

Michael Alonge

Srividya Ramakrishnan

Matthias Benoit

Sebastian Soyk

...

2023/1/1

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity

bioRxiv

Dennis Wm Stevenson

Srividya Ramakrishnan

Cristiane de Santis Alves

Laís Araujo Coelho

Melissa Kramer

...

2023/8/24

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Genome Biology

Martin Hunt

Brice Letcher

Kerri M Malone

Giang Nguyen

Michael B Hall

...

2022/7/5

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

PLoS pathogens

Jay Vornhagen

Christine M Bassis

Srividya Ramakrishnan

Robert Hein

Sophia Mason

...

2021/4/30

Multi-tissue integrative analysis of personal epigenomes

BioRxiv

Joel Rozowsky

Jorg Drenkow

Yucheng Yang

Gamze Gursoy

Timur Galeev

...

2021/4/26

Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area

JCI insight

Peter M Thielen

Shirlee Wohl

Thomas Mehoke

Srividya Ramakrishnan

Melanie Kirsche

...

2021/3/22

Repeated coronavirus disease 2019 molecular testing: correlation of severe acute respiratory syndrome coronavirus 2 culture with molecular assays and cycle thresholds

Clinical infectious diseases

Victoria Gniazdowski

C Paul Morris

Shirlee Wohl

Thomas Mehoke

Srividya Ramakrishnan

...

2021/8/15

Major impacts of widespread structural variation on gene expression and crop improvement in tomato

Cell

Michael Alonge

Xingang Wang

Matthias Benoit

Sebastian Soyk

Lara Pereira

...

2020/7/9

Repeat COVID-19 molecular testing: correlation of SARS-CoV-2 culture with molecular assays and cycle thresholds

Clin Infect Dis

Victoria Gniazdowski

C Paul Morris

Shirlee Wohl

Thomas Mehoke

Srividya Ramakrishnan

...

2020/10/27

Repeat COVID-19 molecular testing: correlation with recovery of infectious virus, molecular assay cycle thresholds, and analytical sensitivity

MedRxiv

Victoria Gniazdowski

C Paul Morris

Shirlee Wohl

Thomas Mehoke

Srividya Ramakrishnan

...

2020/8/6

See List of Professors in Srividya Ramakrishnan University(Johns Hopkins University)

Co-Authors

H-index: 87
Michael C. Schatz

Michael C. Schatz

Johns Hopkins University

H-index: 48
Trish Simner

Trish Simner

Johns Hopkins University

H-index: 42
Winston Timp

Winston Timp

Johns Hopkins University

H-index: 17
Usman Roshan

Usman Roshan

New Jersey Institute of Technology

H-index: 10
Yunfan Fan

Yunfan Fan

Johns Hopkins University

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