Siewert J. Marrink
Rijksuniversiteit Groningen
H-index: 108
Europe-Netherlands
Top articles of Siewert J. Marrink
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Structural Aspects of the ROS1 Kinase Domain and Oncogenic Mutations | Juliana F Vilachã Tsjerk A Wassenaar Siewert J Marrink | 2024/1/23 | |
Building complex membranes with Martini 3 | Methods in Enzymology | Tugba Nur Ozturk Melanie König Timothy S Carpenter Kasper B Pedersen Tsjerk A Wassenaar | 2024/4/9 |
There and back again: bridging meso-and nanoscales to understand lipid vesicle patterning | arXiv | Julie Cornet Nelly Coulonges Weria Pezeshkian Maël Penissat-Mahaut Siewert-Jan Marrink | 2024/1/11 |
GōMartini 3: From large conformational changes in proteins to environmental bias corrections | bioRxiv | Paulo CT Souza Luis P Borges Araujo Chris Brasnett Rodrigo A Moreira Fabian Grunewald | 2024 |
Shocker-a molecular dynamics protocol and tool for accelerating and analyzing the effects of osmotic shocks | Journal of Chemical Theory and Computation | Marco PA van Tilburg Siewert J Marrink Melanie König Fabian Grünewald | 2024/1 |
Vesicle protrusion induced by antimicrobial peptides suggests common carpet mechanism for short antimicrobial peptides | Peter Park Danilo Kiyoshi Matsubara Domenico R Barzotto Filipe S Lima Hernan Chaimovich | 2023/10/11 | |
Probing the stability and interdomain interactions in the ABC transporter OpuA, using single-molecule optical tweezers | Cell reports | Lyan van der Sleen Jan A Stevens Siewert J Marrink Bert Poolman Kasia Tych | 2024/4/23 |
Bartender: Martini 3 Bonded Terms via Quantum Mechanics-based Molecular Dynamics | Chemrxiv | Gilberto P Pereira Riccardo Alessandri Moisés Domínguez Rocío Araya-Osorio Linus Grünewald | 2024/2/20 |
Two decades of Martini: Better beads, broader scope | Siewert J Marrink Luca Monticelli Manuel N Melo Riccardo Alessandri D Peter Tieleman | 2023/1 | |
Martini 3 Coarse-Grained Model for Second-Generation Unidirectional Molecular Motors and Switches | Journal of Chemical Theory and Computation | Petteri Vainikka Siewert J Marrink | 2023/1/10 |
On the Automatic Optimization of Lipid Models in the Martini Force Field using SwarmCG | Journal of Chemical Information and Modeling | Charly Empereur-mot Kasper B Pedersen Cristina Caruso Mattia Perrone Martina Crippa | 2023/5 |
Molecular insights into the effects of focused ultrasound mechanotherapy on lipid bilayers: unlocking the keys to design effective treatments | Journal of Colloid and Interface Science | Alexandre Blanco-González Siewert J Marrink Ángel Piñeiro Rebeca García-Fandiño | 2023/7/13 |
Martini 3 Coarse-Grained Force Field for Cholesterol | Journal of Chemical Theory and Computation | Luís Borges-Araújo Ana C Borges-Araújo Tugba Nur Ozturk Daniel P Ramirez-Echemendia Balázs Fábián | 2023/10/5 |
Identification of inhibitors targeting the energy-coupling factor (ECF) transporters | Communications Biology | Eleonora Diamanti Paulo CT Souza Inda Setyawati Spyridon Bousis Leticia M Gómez | 2023/11/20 |
A synthetic membrane shaper for controlled liposome deformation | ACS Nano | Nicola De Franceschi Weria Pezeshkian Alessio Fragasso Bart M.H. Bruininks Sean Tsai | 2023/1 |
Molecular dynamics simulation of an entire cell | Frontiers in Chemistry | Jan A Stevens Fabian Grünewald PA Marco van Tilburg Melanie König Benjamin R Gilbert | 2023 |
Super High-Throughput Screening of Enzyme Variants by Spectral Graph Convolutional Neural Networks | Journal of Chemical Theory and Computation | Carlos Ramírez-Palacios Siewert J Marrink | 2023/3/24 |
Dynamics of Chromosome Organization in a Minimal Bacterial Cell | Frontiers in Cell and Developmental Biology | Benjamin Robert Gilbert Zane Reed Thornburg Troy Anthony Brier Jan Adriaan Stevens Fabian Grünewald | 2023/7 |
Membrane manipulation by free fatty acids improves microbial plant polyphenol synthesis | Nature Communications | Apilaasha Tharmasothirajan Josef Melcr John Linney Thomas Gensch Karin Krumbach | 2023/9/12 |
OLIVES: A Go-like Model for Stabilizing Protein Structure via Hydrogen Bonding Native Contacts in the Martini 3 Coarse-Grained Force Field | chemRxiv | Kasper B Pedersen Luís Borges-Araújo Amanda D Stange Paulo CT Souza Siewert-Jan Marrink | 2023/11/17 |
Co-Authors
