Siavash Mirarab
University of California, San Diego
H-index: 54
North America-United States
Top articles of Siavash Mirarab
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
CONSULT-II: Accurate taxonomic identification and profiling using locality-sensitive hashing<? A3B2 show [AuthorQuery id=" AQ1" rid=" 1"]?><? A3B2 show [AuthorQuery id=" AQ2 … | Bioinformatics | Ali Osman Berk Şapcı Eleonora Rachtman Siavash Mirarab | 2024/3/16 |
Suggested searches | Perspective | Sunkyung Kim Jing Chen Feiya Ou Tian-Tian Liu Suin Jo | 2024/3/4 |
Memory-bound k-mer selection for large and evolutionary diverse reference libraries | bioRxiv | Ali Osman Berk Şapcı Siavash Mirarab | 2024/2/14 |
Complexity of avian evolution revealed by family-level genomes | Nature | Josefin Stiller Shaohong Feng Al-Aabid Chowdhury Iker Rivas-González David A Duchêne | 2024/4/1 |
Scaling deep phylogenetic embedding to ultra-large reference trees: a tree-aware ensemble approach | bioRxiv | Yueyu Jiang Daniel McDonald Rob Knight Siavash Mirarab | 2023/3/29 |
Greengenes2 unifies microbial data in a single reference tree | Nature biotechnology | Daniel McDonald Yueyu Jiang Metin Balaban Kalen Cantrell Qiyun Zhu | 2023/7/27 |
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates | Bioinformatics | Afif Elghraoui Siavash Mirarab Krister M Swenson Faramarz Valafar | 2023/1/1 |
Species Tree Inference: A Guide to Methods and Applications | Paul D Blischak Jeremy M Brown Zhen Cao Alison Cloutier Kerry Cobb | 2023/3/14 | |
Generation of accurate, expandable phylogenomic trees with uDance | Nature biotechnology | Metin Balaban Yueyu Jiang Qiyun Zhu Daniel McDonald Rob Knight | 2023/7/27 |
DEPP: deep learning enables extending species trees using single genes | Systematic biology | Yueyu Jiang Metin Balaban Qiyun Zhu Siavash Mirarab | 2023/1/1 |
Principal component analysis in space forms | arXiv preprint arXiv:2301.02750 | Puoya Tabaghi Michael Khanzadeh Yusu Wang Sivash Mirarab | 2023/1/6 |
Phylogenomic branch length estimation using quartets | Bioinformatics | Yasamin Tabatabaee Chao Zhang Tandy Warnow Siavash Mirarab | 2023/6/1 |
Optimal Tree Metric Matching Enables Phylogenomic Branch Length Reconciliation | bioRxiv | Shayesteh Arasti Puoya Tabaghi Yasamin Tabatabaee Siavash Mirarab | 2023 |
Tree-based associative data augmentation | 2023/5/16 | ||
CASTER: Direct species tree inference from whole-genome alignments | bioRxiv | Chao Zhang Rasmus Nielsen Siavash Mirarab | 2023 |
Consult-ii: Taxonomic identification using locality sensitive hashing | Ali Osman Berk Şapcı Eleonora Rachtman Siavash Mirarab | 2023/4/14 | |
Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time | Shayesteh Arasti Siavash Mirarab | 2023 | |
Weighting by gene tree uncertainty improves accuracy of quartet-based species trees | Molecular Biology and Evolution | Chao Zhang Siavash Mirarab | 2022/12/1 |
Uncertainty quantification using subsampling for assembly-free estimates of genomic distance and phylogenetic relationships | Eleonora Rachtman Shahab Sarmashghi Vineet Bafna Siavash Mirarab | 2022/4/29 | |
Distance-based phylogenetic placement with statistical support | Biology | Navid Bin Hasan Metin Balaban Avijit Biswas Md Shamsuzzoha Bayzid Siavash Mirarab | 2022/8/12 |
Co-Authors
