Shi-Jie Chen
University of Missouri
H-index: 43
North America-United States
Top articles of Shi-Jie Chen
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Advances in machine-learning approaches to RNA-targeted drug design | Yuanzhe Zhou Shi-Jie Chen | 2024/2/6 | |
Machine Learning in RNA Structure Prediction: Advances and Challenges | Sicheng Zhang Jun Li Shi-Jie Chen | 2024/1/30 | |
Machine learning-inferred and energy landscape-guided analyses reveal kinetic determinants of CRISPR/Cas9 gene editing | bioRxiv | Lei Jin Risi Liyanage Dongsheng Duan Shi-Jie Chen | 2024/1/1 |
Protein folds vs. protein folding: Differing questions, different challenges | Proceedings of the National Academy of Sciences | Shi-Jie Chen Mubashir Hassan Robert L Jernigan Kejue Jia Daisuke Kihara | 2023/1/3 |
Advancing RNA 3D structure prediction: Exploring hierarchical and hybrid approaches in CASP15 | Proteins: Structure, Function, and Bioinformatics | Jun Li Sicheng Zhang Shi‐Jie Chen | 2023/12 |
RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling | Nucleic acids research | Jun Li Shi-Jie Chen | 2023/4/24 |
Graph deep learning locates magnesium ions in RNA | QRB discovery | Yuanzhe Zhou Shi-Jie Chen | 2022/1 |
The gRNA vector level determines the outcome of systemic AAV CRISPR therapy for Duchenne muscular dystrophy | Human gene therapy | Nalinda B Wasala Emily D Million Thais B Watkins Lakmini P Wasala Jin Han | 2022/5/1 |
RLDOCK method for predicting RNA-small molecule binding modes | Methods | Yangwei Jiang Shi-Jie Chen | 2022/1/1 |
RNA–ligand molecular docking: Advances and challenges | Yuanzhe Zhou Yangwei Jiang Shi‐Jie Chen | 2022/5 | |
An RNA aptamer that shifts the reduction potential of metabolic cofactors | Nature chemical biology | John S Samuelian Thomas J Gremminger Zhenwei Song Raghav R Poudyal Jun Li | 2022/11 |
VfoldMCPX: predicting multistrand RNA complexes | RNA | Sicheng Zhang Yi Cheng Peixuan Guo Shi-Jie Chen | 2022/4/1 |
Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models | International Journal of Molecular Sciences | Julita Gumna Maciej Antczak Ryszard W Adamiak Janusz M Bujnicki Shi-Jie Chen | 2022/8/25 |
Landscape zooming toward the prediction of RNA cotranscriptional folding | Journal of chemical theory and computation | Xiaojun Xu Lei Jin Liangxu Xie Shi-Jie Chen | 2022/2/8 |
Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences | Bioinformatics | Jun Li Sicheng Zhang Dong Zhang Shi-Jie Chen | 2022/8/15 |
Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions | Lewis Rolband Damian Beasock Yang Wang Yao-Gen Shu Jonathan D Dinman | 2022/1/1 | |
RNA Structural Modeling for Therapeutic Applications | Yi Cheng Dong Zhang Travis Hurst Xiaoqin Zou Paloma H Giangrande | 2022/7/18 | |
The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity | Nucleic acids research | Zhenwei Song Thomas Gremminger Gatikrushna Singh Yi Cheng Jun Li | 2021/6/4 |
Modeling noncanonical RNA base pairs by a coarse-grained IsRNA2 model | The Journal of Physical Chemistry B | Dong Zhang Shi-Jie Chen Ruhong Zhou | 2021/10/25 |
Graph, pseudoknot, and SARS-CoV-2 genomic RNA: A biophysical synthesis | Biophysical Journal | Shi-Jie Chen | 2021/3/16 |
