Satish Narayanasamy
University of Michigan
H-index: 36
North America-United States
Top articles of Satish Narayanasamy
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Jointly benchmarking small and structural variant calls with vcfdist | bioRxiv | Tim Dunn Justin M Zook James Matthew Holt Satish Narayanasamy | 2024 |
mm2-gb: GPU Accelerated Minimap2 for Long Read DNA Mapping | bioRxiv | Juechu Dong Xueshen Liu Harisankar Sadasivan Sriranjani Sitaraman Satish Narayanasamy | 2024 |
Accelerated dynamic time warping on GPU for selective nanopore sequencing | bioRxiv | Harisankar Sadasivan Daniel Stiffler Ajay Tirumala Johnny Israeli Satish Narayanasamy | 2023/3/6 |
Rapid real-time squiggle classification for read until using rawmap | Archives of clinical and biomedical research | Harisankar Sadasivan Jack Wadden Kush Goliya Piyush Ranjan Robert P Dickson | 2023 |
vcfdist: accurately benchmarking phased small variant calls in human genomes | Nature Communications | Tim Dunn Satish Narayanasamy | 2023/12/9 |
Accelerating Minimap2 for accurate long read alignment on GPUs | Journal of biotechnology and biomedicine | Harisankar Sadasivan Milos Maric Eric Dawson Vishanth Iyer Johnny Israeli | 2023 |
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis | Yufeng Gu Arun Subramaniyan Tim Dunn Alireza Khadem Kuan-Yu Chen | 2023/6/17 | |
nPoRe: n-polymer realigner for improved pileup-based variant calling | BMC bioinformatics | Tim Dunn David Blaauw Reetuparna Das Satish Narayanasamy | 2023/3/16 |
GPU-accelerated Dynamic Time Warping for Selective Nanopore Sequencing | Harisankar Sadasivan Daniel Stiffler Ajay Tirumala Johnny Israeli Satish Narayanasamy | 2023/3/16 | |
Ultra-rapid somatic variant detection via real-time targeted amplicon sequencing | Communications Biology | Jack Wadden Brandon S Newell Joshua Bugbee Vishal John Amy K Bruzek | 2022/7/15 |
nPoRe: n-Polymer Realigner for improved pileup variant calling | bioRxiv | Tim Dunn David Blaauw Reetuparna Das Satish Narayanasamy | 2022/2/18 |
Squigglefilter: An accelerator for portable virus detection | Tim Dunn Harisankar Sadasivan Jack Wadden Kush Goliya Kuan-Yu Chen | 2021/10/18 | |
Accelerated seeding for genome sequence alignment with enumerated radix trees | Arun Subramaniyan Jack Wadden Kush Goliya Nathan Ozog Xiao Wu | 2021/6/14 | |
Genomicsbench: A benchmark suite for genomics | Arun Subramaniyan Yufeng Gu Timothy Dunn Somnath Paul Md Vasimuddin | 2021/3/28 | |
Instruction ordering | 2021/3/23 | ||
{DOLMA}: Securing speculation with the principle of transient {Non-Observability} | Kevin Loughlin Ian Neal Jiacheng Ma Elisa Tsai Ofir Weisse | 2021 | |
Pruning Pair-HMM Algorithm And Hardware Architecture | 2020/7/23 | ||
A High-Throughput Pruning-Based Pair-Hidden-Markov-Model Hardware Accelerator for Next-Generation DNA Sequencing | IEEE Solid-State Circuits Letters | Xiao Wu Arun Subramaniyan Zhehong Wang Satish Narayanasamy Reetuparna Das | 2020/12/16 |
Evaluating Optimality Of A Trace Generated During Sequence Alignment | 2020/7/23 | ||
Sound garbage collection for C using pointer provenance | Proceedings of the ACM on Programming Languages | Subarno Banerjee David Devecsery Peter M Chen Satish Narayanasamy | 2020/11/13 |
