Sandor Vajda
Boston University
H-index: 74
North America-United States
Top articles of Sandor Vajda
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2 | Journal of Chemical Information and Modeling | Ayse A Bekar-Cesaretli Omeir Khan Thu Nguyen Dima Kozakov Diane Joseph-Mccarthy | 2024/1/22 |
Phospho-Tune: Enhanced Structural Modeling of Phosphorylated Protein Interactions | bioRxiv | Ernest Glukhov Veranika Averkava Sergei Kotelnikov Darya Stepanenko Thu Nguyen | 2024 |
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites | Journal of Chemical Information and Modeling | Omeir Khan George Jones Maria Lazou Diane Joseph-McCarthy Dima Kozakov | 2024/3/8 |
Critical assessment of methods for predicting the 3D structure of proteins and protein complexes | Shoshana J Wodak Sandor Vajda Marc F Lensink Dima Kozakov Paul A Bates | 2023/5/9 | |
High Accuracy Prediction of PROTAC Complex Structures | Journal of the American Chemical Society | Mikhail Ignatov Akhil Jindal Sergei Kotelnikov Dmitri Beglov Ganna Posternak | 2023/3/24 |
Mhc-fine: Fine-tuned alphafold for precise mhc-peptide complex prediction | bioRxiv | Ernest Glukhov Dmytro Kalitin Darya Stepanenko Yimin Zhu Thu Nguyen | 2023/12/1 |
Mapping of antibody epitopes based on docking and homology modeling | Proteins: Structure, Function, and Bioinformatics | Israel T Desta Sergei Kotelnikov George Jones Usman Ghani Mikhail Abyzov | 2023/2 |
Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server | Proteins: Structure, Function, and Bioinformatics | Sergei Kotelnikov Ryota Ashizawa Konstantin I Popov Omeir Khan Mikhail Ignatov | 2023/12 |
Improved prediction of MHC-peptide binding using protein language models | Frontiers in Bioinformatics | Nasser Hashemi Boran Hao Mikhail Ignatov Ioannis Ch Paschalidis Pirooz Vakili | 2023 |
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment | Proteins: Structure, Function, and Bioinformatics | Marc F Lensink Guillaume Brysbaert Nessim Raouraoua Paul A Bates Marco Giulini | 2023/12 |
The ClusPro AbEMap web server for the prediction of antibody epitopes | Israel T Desta Sergei Kotelnikov George Jones Usman Ghani Mikhail Abyzov | 2023/6 | |
API Development Increases Access to Shared Computing Resources at Boston University | Journal of software engineering and applications | George Jones Amanda E Wakefield Jeff Triplett Kojo Idrissa James Goebel | 2022/6 |
Preclinical testing of dabigatran in trypsin-dependent pancreatitis | JCI insight | Zsófia Gabriella Pesei Zsanett Jancsó Alexandra Demcsák Balázs Csaba Németh Sandor Vajda | 2022/11/11 |
Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap | Acta Crystallographica Section D: Structural Biology | George Jones Akhil Jindal Usman Ghani Sergei Kotelnikov Megan Egbert | 2022/6/1 |
Conservation of allosteric ligand binding sites in G-protein coupled receptors | Journal of chemical information and modeling | Amanda E Wakefield Dávid Bajusz Dima Kozakov György M Keserű Sandor Vajda | 2022/10/4 |
Mapping the binding sites of challenging drug targets | Amanda E Wakefield Dima Kozakov Sandor Vajda | 2022/8/1 | |
Use of Solvent Mapping for Characterizing the Binding Site and for Predicting the Inhibition of the Human Ether-á-Go-Go-Related K+ Channel | Chemical research in toxicology | Shifan Ma Zhuyezi Sun Yankang Jing Mark McGann Sandor Vajda | 2022/7/27 |
FTMove: A web server for detection and analysis of cryptic and allosteric binding sites by mapping multiple protein structures | Journal of molecular biology | Megan Egbert George Jones Matthew R Collins Dima Kozakov Sandor Vajda | 2022/6/15 |
Novel P. G250A Mutation associated with chronic Pancreatitis highlights Misfolding-prone region in Carboxypeptidase A1 (Cpa1) | International Journal of Molecular Sciences | Máté Sándor Franziska G Thiel Margit Schmid Alexandra Demcsák Nataly C Morales Granda | 2022/12/7 |
Exploring protein hotspots by optimized fragment pharmacophores | Nature Communications | Dávid Bajusz Warren S Wade Grzegorz Satała Andrzej J Bojarski Janez Ilaš | 2021/5/27 |
Co-Authors
