Rui Yin

Rui Yin

Harvard University

H-index: 12

North America-United States

About Rui Yin

Rui Yin, With an exceptional h-index of 12 and a recent h-index of 12 (since 2020), a distinguished researcher at Harvard University, specializes in the field of Machine learning, Bioinformatics, Protein language model, RNA virus and cancer, AD and Rare Disease.

His recent articles reflect a diverse array of research interests and contributions to the field:

SGCL-LncLoc: an interpretable deep learning model for improving lncRNA subcellular localization prediction with supervised graph contrastive learning

Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer

An Interpretable Population Graph Network to Identify Rapid Progression of Alzheimer's Disease Using UK Biobank

VarPPUD: Variant post prioritization developed for undiagnosed genetic disorders

EF-Net: Mental State Recognition by Analyzing Multimodal EEG-fNIRS via CNN

Comet: Convolutional dimension interaction for collaborative filtering

PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

A review of enzyme design in catalytic stability by artificial intelligence

Rui Yin Information

University

Position

Harvard Medical School

Citations(all)

372

Citations(since 2020)

367

Cited By

88

hIndex(all)

12

hIndex(since 2020)

12

i10Index(all)

16

i10Index(since 2020)

16

Email

University Profile Page

Harvard University

Google Scholar

View Google Scholar Profile

Rui Yin Skills & Research Interests

Machine learning

Bioinformatics

Protein language model

RNA virus and cancer

AD and Rare Disease

Top articles of Rui Yin

Title

Journal

Author(s)

Publication Date

SGCL-LncLoc: an interpretable deep learning model for improving lncRNA subcellular localization prediction with supervised graph contrastive learning

Big Data Mining and Analytics

Min Li

Baoying Zhao

Yiming Li

Pingjian Ding

Rui Yin

...

2024/3/6

Gra-CRC-miRTar: The pre-trained nucleotide-to-graph neural networks to identify potential miRNA targets in colorectal cancer

bioRxiv

Rui Yin

Hongru Zhao

Lu Li

Qiang Yang

Min Zeng

...

2024

An Interpretable Population Graph Network to Identify Rapid Progression of Alzheimer's Disease Using UK Biobank

medRxiv

Weimin Meng

Rohit Inampudi

Xiang Zhang

Jie Xu

Yu Huang

...

2024

VarPPUD: Variant post prioritization developed for undiagnosed genetic disorders

medRxiv

Rui Yin

Alba Gutierrez

Undiagnosed Diseases Network

Shilpa Nadimpalli Kobren

Paul Avillach

2024/4/19

EF-Net: Mental State Recognition by Analyzing Multimodal EEG-fNIRS via CNN

Sensors

Aniqa Arif

Yihe Wang

Rui Yin

Xiang Zhang

Ahmed Helmy

2024/3/15

Comet: Convolutional dimension interaction for collaborative filtering

ACM Transactions on Intelligent Systems and Technology

Zhuoyi Lin

Lei Feng

Xingzhi Guo

Yu Zhang

Rui Yin

...

2023/5/8

PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction

Zhang Wan

Zhuoyi Lin

Shamima Rashid

Shaun Yue-Hao Ng

Rui Yin

...

2023/12/5

A review of enzyme design in catalytic stability by artificial intelligence

Yongfan Ming

Wenkang Wang

Rui Yin

Min Zeng

Li Tang

...

2023/5

LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism

Bioinformatics

Min Zeng

Yifan Wu

Yiming Li

Rui Yin

Chengqian Lu

...

2023/12/1

Identification of Outcome-Oriented Progression Subtypes from Mild Cognitive Impairment to Alzheimer’s Disease Using Electronic Health Records

AMIA Annual Symposium Proceedings

Jie Xu

Rui Yin

Yu Huang

Hannah Gao

Yonghui Wu

...

2023

CLCAP: Contrastive learning improves antigenicity prediction for influenza A virus using convolutional neural networks

Methods

Rui Yin

Biao Ye

Jiang Bian

2023/12/1

GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation

Briefings in Bioinformatics

Min Li

Baoying Zhao

Rui Yin

Chengqian Lu

Fei Guo

...

2023/1

Changes in Cyclic Guanosine Monophosphate Channel of 661w Cells In vitro with Excessive Light Time

Journal of Ophthalmic & Vision Research

Yahan Zhang

Rui Yin

Xin Liu

2023/10

Developing Ethics and Equity Principles, Terms, and Engagement Tools to Advance Health Equity and Researcher Diversity in AI and Machine Learning: Modified Delphi Approach

JMIR AI

Rachele Hendricks-Sturrup

Malaika Simmons

Shilo Anders

Kammarauche Aneni

Ellen Wright Clayton

...

2023/12/6

ViPal: a framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences

Journal of biomedical informatics

Rui Yin

Zihan Luo

Pei Zhuang

Min Zeng

Min Li

...

2023/6/1

HSELDA: Heterogeneous Sub-Graph Learning for lncRNA-Disease Associations Prediction

Tiancheng Zhou

Zachary Glanz

Mei Liu

Jiang Bian

Rui Yin

...

2023/12/5

A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods

Briefings in Bioinformatics

Rui Yin

Xianghe Zhu

Min Zeng

Pengfei Wu

Min Li

...

2022/9

Mendelian randomization analysis suggests no associations of herpes simplex virus infections with multiple sclerosis

Frontiers in Neuroscience

Wan Zhang

Pengfei Wu

Rui Yin

Meichen Sun

Rongsen Zhang

...

2022/3/1

Growth differentiation factor 15 is associated with Alzheimer’s disease risk

European Heart Journal

B Allen

B Mumma

N Tran

R Christenson

RG Wilkerson

...

2023/11

Exploring the lethality of human-adapted coronavirus through alignment-free machine learning approaches using genomic sequences

Current Genomics

Rui Yin

Zihan Luo

Chee Keong Kwoh

2021/12/12

See List of Professors in Rui Yin University(Harvard University)

Co-Authors

H-index: 69
Vincent T Chow

Vincent T Chow

National University of Singapore

H-index: 52
Shoba Ranganathan

Shoba Ranganathan

Macquarie University

H-index: 47
Chee Keong KWOH

Chee Keong KWOH

Nanyang Technological University

H-index: 27
Jie Zheng

Jie Zheng

Shanghai Tech University

H-index: 10
Yu Zhang

Yu Zhang

Nanyang Technological University

H-index: 6
Zhuoyi Lin

Zhuoyi Lin

Nanyang Technological University

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