Radka Svobodová
Masarykova univerzita
H-index: 27
Europe-Czech Republic
Top articles of Radka Svobodová
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era | Nucleic Acids Research | Anna Špačková Ondřej Vávra Tomáš Raček Václav Bazgier David Sehnal | 2024/1/5 |
AlphaFind: Discover structure similarity across the entire known proteome | bioRxiv | David Prochazka Terezia Slaninakova Jaroslav Olha Adrian Rosinec Katarina Gresova | 2024 |
αCharges: partial atomic charges for AlphaFold structures in high quality | Nucleic Acids Research | Ondřej Schindler Karel Berka Alessio Cantara Aleš Křenek Dominik Tichý | 2023/7/5 |
Onedata4Sci: Life science data management solution based on Onedata | arXiv preprint arXiv:2311.16712 | Tomáš Svoboda Tomáš Raček Josef Handl Jozef Sabo Adrián Rošinec | 2023/11/28 |
RBP-Tar–a searchable database for experimental RBP binding sites | F1000Research | Katarina Gresova Tomas Racek Vlastimil Martinek David Cechak Radka Svobodova | 2023/6/27 |
GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters | arXiv preprint arXiv:2310.15206 | Lukáš Nevosád Božena Klodová David Honys Radka Svobodová Tomáš Raček | 2023/10/23 |
An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems | Lucie Lamothe Jennifer Rugaard Bregndahl Jensen Hans Ienasescu Ove Johan Ragnar Gustafsson Alban Gaignard | 2023/2/15 | |
Analysis and Visualization of Protein Channels, Tunnels and Pores with MOLEonline & ChannelsDB 2.0 | Anna Špačková Václav Bazgier Tomáš Raček David Sehnal Radka Svobodová | 2023/10 | |
ChannelsDB 2.0: Digging Protein Channels, Tunnels and Pores in the AlphaFold Era | Anna Špačková Ondřej Vávra Tomáš Raček Václav Bazgier David Sehnal | 2023/10 | |
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations | Nucleic Acids Research | Aliaksei Chareshneu Adam Midlik Crina-Maria Ionescu Alexander Rose Vladimír Horský | 2023/7/5 |
CoverView: clear atom-level visualization of electron density coverage of PDB structures to assist validation | Aliaksei Chareshneu David Sehnal Radka Svobodová | 2022 | |
CF Day Meeting | Vladimír Sklenář Radovan Fiala Jiří Nováček Josef Houser Jan Přibyl | 2022 | |
Discovering the general architecture of protein families with OverProt | ENBIK2022 conference proceedings | A Midlik I Hutařová Vařeková J Hutař A Chareshneu R Svobodová | 2022 |
OverProt: secondary structure consensus for protein families | Bioinformatics | Adam Midlik Ivana Hutařová Vařeková Jan Hutař Aliaksei Chareshneu Karel Berka | 2022/7/15 |
PDBe-KB: collaboratively defining the biological context of structural data | Nucleic acids research | 2022/1/7 | |
Optimized SQE atomic charges for peptides accessible via a web application | Journal of cheminformatics | Ondřej Schindler Tomáš Raček Aleksandra Maršavelski Jaroslav Koča Karel Berka | 2021/6/30 |
Uncovering of cytochrome P450 anatomy by SecStrAnnotator | Scientific Reports | Adam Midlik Veronika Navrátilová Taraka Ramji Moturu Jaroslav Koča Radka Svobodová | 2021/6/11 |
CATH: increased structural coverage of functional space | Nucleic acids research | Ian Sillitoe Nicola Bordin Natalie Dawson Vaishali P Waman Paul Ashford | 2021/1/8 |
2DProts: database of family-wide protein secondary structure diagrams | Bioinformatics | Ivana Hutařová Vařeková Jan Hutař Adam Midlik Vladimír Horský Eva Hladká | 2021/12/1 |
High-performance macromolecular data delivery and visualization for the web. Corrigendum | Acta crystallographica. Section D, Structural biology | David Sehnal Radka Svobodová Karel Berka Alexander S Rose Stephen K Burley | 2021/1/1 |
Co-Authors
