Paul P. Gardner

Paul P. Gardner

University of Otago

H-index: 40

Oceania-New Zealand

About Paul P. Gardner

Paul P. Gardner, With an exceptional h-index of 40 and a recent h-index of 28 (since 2020), a distinguished researcher at University of Otago, specializes in the field of ncRNA, Bioinformatics, Genome variation, Benchmarking.

His recent articles reflect a diverse array of research interests and contributions to the field:

Serratia‐based toxin cluster elements are associated with a type I fimbria

The PitA protein contributes to colistin susceptibility in Pseudomonas aeruginosa

Finding priority bacterial ribosomes for future structural and antimicrobial research based upon global RNA and protein sequence analysis

LazyPair: scalable prediction of protein-protein interactions and interaction types

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software.

High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality

The Rcs stress response inversely controls surface and CRISPR–Cas adaptive immunity to discriminate plasmids and phages

On the optimistic performance evaluation of newly introduced bioinformatic methods

Paul P. Gardner Information

University

Position

New Zealand

Citations(all)

9572

Citations(since 2020)

3819

Cited By

7502

hIndex(all)

40

hIndex(since 2020)

28

i10Index(all)

70

i10Index(since 2020)

52

Email

University Profile Page

University of Otago

Google Scholar

View Google Scholar Profile

Paul P. Gardner Skills & Research Interests

ncRNA

Bioinformatics

Genome variation

Benchmarking

Top articles of Paul P. Gardner

Title

Journal

Author(s)

Publication Date

Serratia‐based toxin cluster elements are associated with a type I fimbria

MicrobiologyOpen

Lesley Sitter

Marion Schoof

Travis R Glare

Murray P Cox

Peter C Fineran

...

2024/2

The PitA protein contributes to colistin susceptibility in Pseudomonas aeruginosa

PloS one

Mareike B Erdmann

Paul P Gardner

Iain L Lamont

2023/10/12

Finding priority bacterial ribosomes for future structural and antimicrobial research based upon global RNA and protein sequence analysis

PeerJ

Helena B Cooper

Kurt L Krause

Paul P Gardner

2023/3/22

LazyPair: scalable prediction of protein-protein interactions and interaction types

bioRxiv

Chun Shen Lim

Bikash K Bhandari

Paul P Gardner

2022/1/1

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software.

Genome Biology

Paul P Gardner

James M Paterson

Fatemeh Ashari Ghomi

Sinan Uğur U Umu

Stephanie McGimpsey

...

2022/2/16

High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality

bioRxiv

Fatemeh Ashari Ghomi

Gemma Langridge

Amy K Cain

Christine J Boinett

Moataz Abd El Ghany

...

2022

The Rcs stress response inversely controls surface and CRISPR–Cas adaptive immunity to discriminate plasmids and phages

Nature Microbiology

Leah M Smith

Simon A Jackson

Lucia M Malone

James E Ussher

Paul P Gardner

...

2021

On the optimistic performance evaluation of newly introduced bioinformatic methods

Genome Biology

Stefan Buchka

Alexander Hapfelmeier

Paul P Gardner

Rory Wilson

Anne-Laure Boulesteix

2021/12

Razor: annotation of signal peptides from toxins

bioRxiv

Bikash K Bhandari

Paul P Gardner

Chun Shen Lim

2021/1/1

Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites

PLOS Computational Biology

Bikash K Bhandari

Chun Shen Lim

Daniela M Remus

Augustine Chen

Craig van Dolleweerd

...

2021/10/5

SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression

Leah M Smith

Simon A Jackson

Paul P Gardner

Peter C Fineran

2021/9

TISIGNER.com: web services for improving recombinant protein production

Nucleic Acids Research

Bikash K Bhandari

Chun Shen Lim

Paul P Gardner

2021/3/21

Evolution of virulence in a novel family of transmissible mega-plasmids

Environmental Microbiology

Thomas L Sitter

Amy L Vaughan

Marion Schoof

Simon A Jackson

Travis R Glare

...

2021/9

Features of Functional Human Genes.

bioRxiv

Helena B Cooper

Paul P Gardner

2020/1/1

Solubility-Weighted Index: fast and accurate prediction of protein solubility

Bioinformatics

Bikash K. Bhandari

Paul P. Gardner

Chun S. Lim

2020

A draft genome sequence of the elusive giant squid, Architeuthis dux

GigaScience

Rute R Da Fonseca

Alvarina Couto

Andre M Machado

Brona Brejova

Carolin B Albertin

...

2020/1

A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity

Nature Microbiology

Lucia M Malone

Suzanne L Warring

Simon A Jackson

Carolin Warnecke

Paul P Gardner

...

2020/1

The tuatara genome reveals ancient features of amniote evolution

Nature

Neil J Gemmell

Kim Rutherford

Stefan Prost

Marc Tollis

David Winter

...

2020/8/5

ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls

Database

Harry Biggs

Padmini Parthasarathy

Alexandra Gavryushkina

Paul P Gardner

2020

See List of Professors in Paul P. Gardner University(University of Otago)

Co-Authors

H-index: 172
Julian Parkhill

Julian Parkhill

University of Cambridge

H-index: 95
Sean R. Eddy

Sean R. Eddy

Harvard University

H-index: 85
Anders Krogh

Anders Krogh

Københavns Universitet

H-index: 65
Sam Griffiths-Jones

Sam Griffiths-Jones

Manchester University

H-index: 53
Peter Fineran

Peter Fineran

University of Otago

H-index: 34
Anthony M Poole

Anthony M Poole

University of Auckland

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