Paola Bonizzoni
Università degli Studi di Milano-Bicocca
H-index: 25
Europe-Italy
Top articles of Paola Bonizzoni
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
From the Lyndon factorization to the Canonical Inverse Lyndon factorization: back and forth | arXiv preprint arXiv:2404.17969 | Paola Bonizzoni Clelia De Felice Rocco Zaccagnino Rosalba Zizza | 2024/4/27 |
Differential quantification of alternative splicing events on spliced pangenome graphs | bioRxiv | Simone Ciccolella Davide Cozzi Gianluca Della Vedova Stephen Kuria Paola Bonizzoni | 2023 |
μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data | Bioinformatics | Davide Cozzi Massimiliano Rossi Simone Rubinacci Travis Gagie Dominik Köppl | 2023/9/1 |
ESGq: Alternative Splicing events quantification across conditions based on Event Splicing Graphs | bioRxiv | Davide Cozzi Paola Bonizzoni Luca Denti | 2023 |
Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via PBWT | Paola Bonizzoni Gianluca Della Vedova Yuri Pirola Raffaella Rizzi Mattia Sgrò | 2023/6/29 | |
Accurate and fast clade assignment via deep learning and frequency chaos game representation | GigaScience | Jorge Avila Cartes Santosh Anand Simone Ciccolella Paola Bonizzoni Gianluca Della Vedova | 2023 |
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads | Nature Methods | Luca Denti Parsoa Khorsand Paola Bonizzoni Fereydoun Hormozdiari Rayan Chikhi | 2023/4 |
μ-PBWT: Enabling the Storage and Use of UK Biobank Data on a Commodity Laptop | bioRxiv | Davide Cozzi Massimiliano Rossi Simone Rubinacci Dominik Köppl Christina Boucher | 2023/2/16 |
Identification of Chimeric RNAs: a novel machine learning perspective | P Bonizzoni C De Felice Y Pirola R Rizzi R Zaccagnino | 2023 | |
Data Structures for SMEM-Finding in the PBWT | Paola Bonizzoni Christina Boucher Davide Cozzi Travis Gagie Dominik Köppl | 2023/9/20 | |
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches | Information Sciences | Paola Bonizzoni Matteo Costantini Clelia De Felice Alessia Petescia Yuri Pirola | 2022/8/1 |
Kfinger: capturing overlaps between long reads by using Lyndon fingerprints | Paola Bonizzoni Alessia Petescia Yuri Pirola Raffaella Rizzi Rocco Zaccagnino | 2022/6/8 | |
Can Formal Languages help Pangenomics to represent and analyze multiple genomes? | Paola Bonizzoni Clelia De Felice Yuri Pirola Raffaella Rizzi Rocco Zaccagnino | 2022/5/6 | |
Computational graph pangenomics: a tutorial on data structures and their applications | Jasmijn A Baaijens Paola Bonizzoni Christina Boucher Gianluca Della Vedova Yuri Pirola | 2022/3 | |
RecGraph: adding recombinations to sequence-to-graph alignments | bioRxiv | Jorge Avila Cartes Paola Bonizzoni Simone Ciccolella Gianluca Della Vedova Luca Denti | 2022 |
Improved structural variant discovery in hard-to-call regions using sample-specific string detection from accurate long reads | bioRxiv | Luca Denti Parsoa Khorsand Paola Bonizzoni Fereydoun Hormozdiari Rayan Chikhi | 2022/2/14 |
Compressed data structures for population-scale Positional Burrows–Wheeler Transforms | bioRxiv | Paola Bonizzoni Christina Boucher Davide Cozzi Travis Gagie Sana Kashgouli | 2022/9/19 |
Finding maximal exact matches using the r-index | Journal of Computational Biology | Massimiliano Rossi Marco Oliva Paola Bonizzoni Ben Langmead Travis Gagie | 2022/2/1 |
Inferring cancer progression from single-cell sequencing while allowing mutation losses | Bioinformatics | Simone Ciccolella Camir Ricketts Mauricio Soto Gomez Murray Patterson Dana Silverbush | 2021/2/1 |
MALVIRUS: an integrated application for viral variant analysis | BMC bioinformatics | Simone Ciccolella Luca Denti Paola Bonizzoni Gianluca Della Vedova Yuri Pirola | 2021/11 |
Co-Authors
