CUFinder

Pablo Ricardo Arantes

About Pablo Ricardo Arantes

Pablo Ricardo Arantes, With an exceptional h-index of 13 and a recent h-index of 13 (since 2020), a distinguished researcher at University of California, Riverside, specializes in the field of Molecular Modeling, Molecular Dynamics, Computational Chemistry, Conformation and Function of Macromolecules.

His recent articles reflect a diverse array of research interests and contributions to the field:

An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a

Biophysical origin of adenine base editors’ improved editing efficiency

New design strategies for ultra-specific CRISPR-Cas13a-based RNA detection with single-nucleotide mismatch sensitivity

Unveiling the RNA-mediated allosteric activation discloses functional hotspots in CRISPR-Cas13a

GPU-enhanced DFTB metadynamics for efficiently predicting free energies of biochemical systems

Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes

RNA-mediated Allosteric Activation in CRISPR-Cas13a

Harnessing GPU-Enhanced Simulations for Efficient DFTB Metadynamics of Biochemical Systems

Pablo Ricardo Arantes Information

University

Position

Department of Bioengineering

Citations(all)

689

Citations(since 2020)

659

Cited By

98

hIndex(all)

13

hIndex(since 2020)

13

i10Index(all)

14

i10Index(since 2020)

13

Email

University Profile Page

Google Scholar

Pablo Ricardo Arantes Skills & Research Interests

Molecular Modeling

Molecular Dynamics

Computational Chemistry

Conformation and Function of Macromolecules

Top articles of Pablo Ricardo Arantes

An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a

Nature Communications

2024/2/17

Aakash Saha
Aakash Saha

H-Index: 3

Mohd Ahsan
Mohd Ahsan

H-Index: 3

Michael Schmitz
Michael Schmitz

H-Index: 6

Martin Jinek
Martin Jinek

H-Index: 41

Giulia Palermo
Giulia Palermo

H-Index: 22

Biophysical origin of adenine base editors’ improved editing efficiency

Biophysical Journal

2024/2/8

Xiaoyu Chen
Xiaoyu Chen

H-Index: 3

Aakash Saha
Aakash Saha

H-Index: 3

Matthew Sample
Matthew Sample

H-Index: 7

Audrone Lapinaite
Audrone Lapinaite

H-Index: 8

Giulia Palermo
Giulia Palermo

H-Index: 22

New design strategies for ultra-specific CRISPR-Cas13a-based RNA detection with single-nucleotide mismatch sensitivity

Nucleic Acids Research

2023/11/30

Stephen Dewhurst
Stephen Dewhurst

H-Index: 28

Giulia Palermo
Giulia Palermo

H-Index: 22

Unveiling the RNA-mediated allosteric activation discloses functional hotspots in CRISPR-Cas13a

Nucleic Acids Research

2023/11/30

Giulia Palermo
Giulia Palermo

H-Index: 22

GPU-enhanced DFTB metadynamics for efficiently predicting free energies of biochemical systems

Molecules

2023/1/28

Anshuman Kumar
Anshuman Kumar

H-Index: 4

Aakash Saha
Aakash Saha

H-Index: 3

Giulia Palermo
Giulia Palermo

H-Index: 22

Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes

2023/1/9

Jimin Wang
Jimin Wang

H-Index: 34

Mohd Ahsan
Mohd Ahsan

H-Index: 3

Federica Maschietto
Federica Maschietto

H-Index: 9

Brandon Allen
Brandon Allen

H-Index: 77

Giulia Palermo
Giulia Palermo

H-Index: 22

RNA-mediated Allosteric Activation in CRISPR-Cas13a

bioRxiv

2023

Mitchell R O'Connell
Mitchell R O'Connell

H-Index: 13

Giulia Palermo
Giulia Palermo

H-Index: 22

Harnessing GPU-Enhanced Simulations for Efficient DFTB Metadynamics of Biochemical Systems

APS March Meeting Abstracts

2023

Anshuman Kumar
Anshuman Kumar

H-Index: 4

Pablo Arantes
Pablo Arantes

H-Index: 5

Aakash Saha
Aakash Saha

H-Index: 3

Giulia Palermo
Giulia Palermo

H-Index: 22

Substrate-independent activation pathways of the CRISPR-Cas9 HNH nuclease

Biophysical Journal

2023/12/19

Jimin Wang
Jimin Wang

H-Index: 34

Federica Maschietto
Federica Maschietto

H-Index: 9

Tianyin Qiu
Tianyin Qiu

H-Index: 2

Giulia Palermo
Giulia Palermo

H-Index: 22

Machines on genes through the computational microscope

2023/3/22

Mohd Ahsan
Mohd Ahsan

H-Index: 3

Giulia Palermo
Giulia Palermo

H-Index: 22

Defining the allosteric role of RNA in the CRISPR-associated Cas13a protein activation

Biophysical Journal

2023/2/10

Giulia Palermo
Giulia Palermo

H-Index: 22

Structure and dynamics of off-target effects in CRISPR-Cas9

Biophysical Journal

2023/2/10

Aakash Saha
Aakash Saha

H-Index: 3

Martin Pacesa
Martin Pacesa

H-Index: 5

Martin Jinek
Martin Jinek

H-Index: 41

Giulia Palermo
Giulia Palermo

H-Index: 22

Unveiling Cas8 dynamics and regulation of a transposon-encoded cascade-TniQ complex

Biophysical Journal

2023/2/10

Giulia Palermo
Giulia Palermo

H-Index: 22

Key role of an alpha-helical lid in driving the target DNA toward catalysis in CRISPR-Cas12a

Biophysical Journal

2023/2/10

Aakash Saha
Aakash Saha

H-Index: 3

Mohd Ahsan
Mohd Ahsan

H-Index: 3

Michael Schmitz
Michael Schmitz

H-Index: 6

Martin Jinek
Martin Jinek

H-Index: 41

Giulia Palermo
Giulia Palermo

H-Index: 22

Electrostatic networks for characterization of allosteric pathways: Allosteric paths in Cas9 apo, DNA-and RNA-bound forms

Biophysical Journal

2023/2/10

Federica Maschietto
Federica Maschietto

H-Index: 9

Brandon Allen
Brandon Allen

H-Index: 77

Giulia Palermo
Giulia Palermo

H-Index: 22

Principles of DNA cleavage in CRISPR-Cas9

Biophysical Journal

2023/2/10

Martin Pacesa
Martin Pacesa

H-Index: 5

Martin Jinek
Martin Jinek

H-Index: 41

Giulia Palermo
Giulia Palermo

H-Index: 22

Structural basis for Cas9 off-target activity

Cell

2022/10/27

Martin Pacesa
Martin Pacesa

H-Index: 5

Aakash Saha
Aakash Saha

H-Index: 3

Giulia Palermo
Giulia Palermo

H-Index: 22

Peter Cameron
Peter Cameron

H-Index: 29

Martin Jinek
Martin Jinek

H-Index: 41

Principles of target DNA cleavage and the role of Mg2+ in the catalysis of CRISPR–Cas9

Nature catalysis

2022/10

Mohd Ahsan
Mohd Ahsan

H-Index: 3

Martin Pacesa
Martin Pacesa

H-Index: 5

Martin Jinek
Martin Jinek

H-Index: 41

Giulia Palermo
Giulia Palermo

H-Index: 22

Emerging methods and applications to decrypt allostery in proteins and nucleic acids

2022/9/15

Giulia Palermo
Giulia Palermo

H-Index: 22

Enhancement of CRISPR/Cas12a trans-cleavage activity using hairpin DNA reporters

Nucleic acids research

2022/8/12

Marianna Rossetti
Marianna Rossetti

H-Index: 5

Danila Moscone
Danila Moscone

H-Index: 42

Aakash Saha
Aakash Saha

H-Index: 3

Francesco Ricci
Francesco Ricci

H-Index: 14

John Van Der Oost
John Van Der Oost

H-Index: 55

Giulia Palermo
Giulia Palermo

H-Index: 22

Alessandro Porchetta
Alessandro Porchetta

H-Index: 17

See List of Professors in Pablo Ricardo Arantes University(University of California, Riverside)