Mile Sikic
Sveucilište u Zagrebu
H-index: 23
Europe-Croatia
Top articles of Mile Sikic
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
The Hitchhiker’s Guide to Sequencing Data Types and Volumes for Population-Scale Pangenome Construction | bioRxiv | Prasad Sarashetti Josipa Lipovac Filip Tomas Mile Šikic Jianjun Liu | 2024/3/16 |
RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks | arXiv preprint arXiv:2403.00043 | Rafael Josip Penić Tin Vlašić Roland G Huber Yue Wan Mile Šikić | 2024/2/29 |
Comparative analysis of metagenomic classifiers for long-read sequencing datasets | BMC bioinformatics | Josip Marić Krešimir Križanović Sylvain Riondet Niranjan Nagarajan Mile Šikić | 2024/1/11 |
Geometric deep learning framework for de novo genome assembly | bioRxiv | Lovro Vrček Xavier Bresson Thomas Laurent Martin Schmitz Kenji Kawaguchi | 2024 |
Finding Hamiltonian cycles with graph neural networks | Filip Bosnić Mile Šikić | 2023/9/18 | |
Reconstruction of short genomic sequences with graph convolutional networks | Lovro Vrćek Xavier Bresson Thomas Laurent Martin Schmitz Mile Šikić | 2023/5/22 | |
Graph Neural Network Meets de Bruijn Genome Assembly | Marijo Simunovic Lovro Vrcek Mile Sikic | 2023/9/18 | |
Learning to untangle genome assembly with graph convolutional networks | arXiv preprint arXiv:2206.00668 | Lovro Vrček Xavier Bresson Thomas Laurent Martin Schmitz Mile Šikić | 2022/6/1 |
Učinkovitost sljedeće generacije sekvenciranja u dijagnostici bakterijskih zoonoza | Veterinarska stanica | Sanja Duvnjak Željko Pavlinec Robert Vaser Krešimir Križanović Mile Šikić | 2022 |
Efficacy of next-generation sequencing in bacterial zoonoses diagnostics | Veterinarska stanica | Sanja Duvnjak Željko Pavlinec Robert Vaser Krešimir Križanović Mile Šikić | 2022 |
Rockfish: a transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing | bioRxiv | Dominik Stanojević Zhe Li Roger Foo Mile Šikić | 2022/11/14 |
Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral … | Communications biology | Abner Herbert Lim Zhen Jie Low Prashant Narendra Shingate Jing Han Hong Shu Chen Chong | 2022/9/15 |
Direct identification of A-to-I editing sites with nanopore native RNA sequencing | Nature methods | Tram Anh Nguyen Jia Wei Joel Heng Pornchai Kaewsapsak Eng Piew Louis Kok Dominik Stanojević | 2022/7 |
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines | BioRxiv | Ying Chen Nadia M Davidson Yuk Kei Wan Harshil Patel Fei Yao | 2021/4/22 |
Whole genome comparison of Vibrio harveyi strains from the Mediterranean Sea | Željko Pavlinec Robert Vaser Ivana Giovanna Zupičić Snježana Zrnčić Dražen Oraić | 2021 | |
Genome Sequence Reconstruction Using Gated Graph Convolutional Network | Lovro Vrček Robert Vaser Thomas Laurent Mile Sikic Xavier Bresson | 2021/10/6 | |
Time-and memory-efficient genome assembly with Raven | Nature Computational Science | Robert Vaser Mile Šikić | 2021/5 |
Comprehensive benchmarking of metagenomic classification tools for long-read sequencing data | BioRxiv | Josip Marić Krešimir Križanović Sylvain Riondet Niranjan Nagarajan Mile Šikić | 2020/11/26 |
A step towards neural genome assembly | arXiv preprint arXiv:2011.05013 | Lovro Vrček Petar Veličković Mile Šikić | 2020/11/10 |
Raven: a de novo genome assembler for long reads | BioRxiv | Robert Vaser Mile Šikić | 2020/8/10 |
Co-Authors
