Mark Gerstein
Yale University
H-index: 193
North America-United States
Top articles of Mark Gerstein
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A Variational Graph Partitioning Approach to Modeling Protein Liquid-liquid Phase Separation | bioRxiv | Gaoyuan Wang Jonathan Warrell Suchen Zheng Mark Gerstein | 2024 |
Disentangled Wasserstein Autoencoder for T-Cell Receptor Engineering | Advances in Neural Information Processing Systems | Tianxiao Li Hongyu Guo Filippo Grazioli Mark Gerstein Martin Renqiang Min | 2024/2/13 |
Single-cell genomics and regulatory networks for 388 human brains | bioRxiv | Prashant S Emani Jason J Liu Declan Clarke Matthew Jensen Jonathan Warrell | 2024/3/19 |
Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships | bioRxiv | MIchelle Kudron Louis Gewirtzman Alec Victorsen Bridget C Lear Jiahao Gao | 2024 |
Prioritizing Safeguarding Over Autonomy: Risks of LLM Agents for Science | arXiv preprint arXiv:2402.04247 | Xiangru Tang Qiao Jin Kunlun Zhu Tongxin Yuan Yichi Zhang | 2024/2/6 |
Less-is-more: selecting transcription factor binding regions informative for motif inference | Nucleic Acids Research | Jinrui Xu Jiahao Gao Pengyu Ni Mark Gerstein | 2024/2/28 |
Transcriptional Determinism and Stochasticity Contribute to the Complexity of Autism Associated SHANK Family Genes | bioRxiv | Xiaona Lu Pengyu Ni Paola Suarez-Meade Ma Yu Emily Niemitz Forrest | 2024 |
-QVAE: A Quantum Variational Autoencoder utilizing Regularized Mixed-state Latent Representations | arXiv preprint arXiv:2402.17749 | Gaoyuan Wang Jonathan Warrell Prashant S Emani Mark Gerstein | 2024/2/27 |
Predicting A/B compartments from histone modifications using deep learning | bioRxiv | Suchen Zheng Nitya Thakkar Hannah L Harris Megan Zhang Susanna Liu | 2022/4/19 |
Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq | bioRxiv | Sophia C Gaynor-Gillett Lijun Cheng Manman Shi Jason Liu Gaoyuan Wang | 2024 |
ChatCell: Facilitating Single-Cell Analysis with Natural Language | arXiv preprint arXiv:2402.08303 | Yin Fang Kangwei Liu Ningyu Zhang Xinle Deng Penghui Yang | 2024/2/13 |
MIMIR: A Streamlined Platform for Personalized Agent Tuning in Domain Expertise | arXiv preprint arXiv:2404.04285 | Chunyuan Deng Xiangru Tang Yilun Zhao Hanming Wang Haoran Wang | 2024/4/3 |
Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues | bioRxiv | Zhiliang Bai Dingyao Zhang Yan Gao Bo Tao Shuozhen Bao | 2024 |
A Survey of Generative AI for De Novo Drug Design: New Frontiers in Molecule and Protein Generation | arXiv preprint arXiv:2402.08703 | Xiangru Tang Howard Dai Elizabeth Knight Fang Wu Yunyang Li | 2024/2/13 |
Latent evolutionary signatures: a general framework for analysing music and cultural evolution | bioRxiv | Jonathan Warrell Leonidas Salichos Mark Gerstein | 2020/10/25 |
Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing | Nature genetics | Isidro Cortés-Ciriano Jake June-Koo Lee Ruibin Xi Dhawal Jain Youngsook L Jung | 2023/5 |
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity | bioRxiv | Fairlie Reese Brian Williams Gabriela Balderrama-Gutierrez Dana Wyman Muhammed Hasan Çelik | 2023/5/16 |
Minor intron splicing is critical for survival of lethal prostate cancer | Molecular cell | Anke Augspach Kyle D Drake Luca Roma Ellen Qian Se Ri Lee | 2023/6/7 |
More than bad luck: Cancer and aging are linked to replication-driven changes to the epigenome | Science Advances | Christopher J Minteer Kyra Thrush John Gonzalez Peter Niimi Mariya Rozenblit | 2023/7/19 |
Improved prediction of ligand-protein binding affinities by meta-modeling | arXiv preprint arXiv:2310.03946 | Ho-Joon Lee Prashant S Emani Mark B Gerstein | 2023/10/5 |
