Mark Chaisson
University of Southern California
H-index: 35
North America-United States
Top articles of Mark Chaisson
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy | Nature Biotechnology | Delphine Larivière Linelle Abueg Nadolina Brajuka Cristóbal Gallardo-Alba Bjorn Grüning | 2024/1/26 |
Analysis and benchmarking of small and large genomic variants across tandem repeats | Nature Biotechnology | Adam C English Egor Dolzhenko Helyaneh Ziaei Jam Sean K McKenzie Nathan D Olson | 2024/4/26 |
A high-quality blue whale genome, segmental duplications, and historical demography | Molecular Biology and Evolution | Yury V Bukhman Phillip A Morin Susanne Meyer Li-Fang Chu Jeff K Jacobsen | 2024/3 |
Chromosome level genome assembly of the Etruscan shrew Suncus etruscus | Scientific Data | Yury V Bukhman Susanne Meyer Li-Fang Chu Linelle Abueg Jessica Antosiewicz-Bourget | 2024/2/7 |
Benchmarking of small and large variants across tandem repeats | bioRxiv | Adam English Egor Dolzhenko Helyaneh Ziaei-Jam Nathan D Olson Sean Mckenzie | 2023 |
Vamos: variable-number tandem repeats annotation using efficient motif sets | Genome Biology | Jingwen Ren Bida Gu Mark JP Chaisson | 2023/7/27 |
Advances in the discovery and analyses of human tandem repeats | Mark JP Chaisson Arvis Sulovari Paul N Valdmanis Danny E Miller Evan E Eichler | 2023/10/31 | |
VISTA: An integrated framework for structural variant discovery | bioRxiv | Varuni Sarwal Seungmo Lee Jianzhi Yang Sriram Sankararaman Mark Chaisson | 2023 |
A draft human pangenome reference | Nature | Wen-Wei Liao Mobin Asri Jana Ebler Daniel Doerr Marina Haukness | 2023/5/11 |
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation | Nature Methods | Mikhail Kolmogorov Kimberley J Billingsley Mira Mastoras Melissa Meredith Jean Monlong | 2023/10 |
A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure | bioRxiv | Chong Li Marc Jan Bonder Sabriya Syed Human Genome Structural Variation Consortium (HGSVC) HGSVC Functional Analysis Working Group | 2023 |
Gaps and complex structurally variant loci in phased genome assemblies | Genome research | David Porubsky Mitchell R Vollger William T Harvey Allison N Rozanski Peter Ebert | 2023/4/1 |
HQAlign: aligning nanopore reads for SV detection using current-level modeling | Bioinformatics | Dhaivat Joshi Suhas Diggavi Mark JP Chaisson Sreeram Kannan | 2023/10/1 |
The motif composition of variable number tandem repeats impacts gene expression | Genome research | Tsung-Yu Lu Paulina N Smaruj Geoffrey Fudenberg Nicholas Mancuso Mark JP Chaisson | 2023/4/1 |
Structural variation across 138,134 samples in the TOPMed consortium | bioRxiv | Goo Jun Adam C English Ginger A Metcalf Jianzhi Yang Mark JP Chaisson | 2023/1/25 |
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome | Cell Reports Methods | HoJoon Lee Stephanie U Greer Dmitri S Pavlichin Bo Zhou Alexander E Urban | 2023/8/28 |
vamos: VNTR annotation using efficient motif sets | bioRxiv | Jingwen Ren Bida Gu Mark JP Chaisson | 2022/10/8 |
TT-Mars: structural variants assessment based on haplotype-resolved assemblies | Genome Biology | Jianzhi Yang Mark JP Chaisson | 2022/5/6 |
The Human Pangenome Project: a global resource to map genomic diversity | Ting Wang Lucinda Antonacci-Fulton Kerstin Howe Heather A Lawson Julian K Lucas | 2022/4/21 | |
Semi-automated assembly of high-quality diploid human reference genomes | Nature | Erich D Jarvis Giulio Formenti Arang Rhie Andrea Guarracino Chentao Yang | 2022/11/17 |
