Lior Pachter
California Institute of Technology
H-index: 82
North America-United States
Top articles of Lior Pachter
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Quantifying orthogonal barcodes for sequence census assays | Bioinformatics Advances | A Sina Booeshaghi Kyung Hoi Min Jase Gehring Lior Pachter | 2024/1/1 |
Fast and scalable querying of eukaryotic linear motifs with gget elm | Bioinformatics | Laura Luebbert Chi Hoang Manjeet Kumar Lior Pachter | 2024/3/1 |
A Biophysical Model for ATAC-seq Data Analysis | bioRxiv | Catherine Felce Gennady Gorin Lior Pachter | 2024/1/29 |
New and notable: Revisiting the “two cultures” through extrinsic noise | Biophysical Journal | Gennady Gorin Lior Pachter | 2024/1/2 |
The impact of package selection and versioning on single-cell RNA-seq analysis | bioRxiv | Joseph M Rich Lambda Moses Pétur Helgi Einarsson Kayla Jackson Laura Luebbert | 2024/4/5 |
Algorithms for a Commons Cell Atlas | bioRxiv | A Sina Booeshaghi Ángel Gálvez-Merchán Lior Pachter | 2024 |
A machine-readable specification for genomics assays | Bioinformatics | Ali Sina Booeshaghi Xi Chen Lior Pachter | 2024/4 |
Trajectory inference from single-cell genomics data with a process time model | bioRxiv | Meichen Fang Gennady Gorin Lior Pachter | 2024 |
De novo mutation discovery in a mouse model and a human patient sample of non-Hodgkin's lymphoma | Cancer Research | Delaney K Sullivan Eissa Albinali Mayuko Boffelli Lior Pachter | 2024/3/22 |
Data-Driven Approaches to Searches for the Technosignatures of Advanced Civilizations | arXiv preprint arXiv:2308.15518 | T Joseph W Lazio SG Djorgovski Andrew Howard Curt Cutler Sofia Z Sheikh | 2023/8/29 |
Assessing markovian and delay models for single-nucleus RNA sequencing | Bulletin of Mathematical Biology | Gennady Gorin Shawn Yoshida Lior Pachter | 2023/11 |
Efficient querying of genomic reference databases with gget | Bioinformatics | Laura Luebbert Lior Pachter | 2023/1/1 |
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data | bioRxiv | Maria Carilli Gennady Gorin Yongin Choi Tara Chari Lior Pachter | 2023/1/14 |
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity | bioRxiv | Fairlie Reese Brian Williams Gabriela Balderrama-Gutierrez Dana Wyman Muhammed Hasan Çelik | 2023/5/16 |
The specious art of single-cell genomics | PLOS Computational Biology | Tara Chari Lior Pachter | 2023/8/17 |
Studying stochastic systems biology of the cell with single-cell genomics data | Gennady Gorin John J Vastola Lior Pachter | 2023/10/18 | |
Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression | bioRxiv | Laura Luebbert Delaney K Sullivan Maria Carilli Kristján Eldjárn Hjörleifsson Alexander Viloria Winnett | 2023/12/12 |
Metadata retrieval from sequence databases with ffq | Bioinformatics | Ángel Gálvez-Merchán Kyung Hoi Min Lior Pachter A Sina Booeshaghi | 2023/1/1 |
Voyager: exploratory single-cell genomics data analysis with geospatial statistics | bioRxiv | Lambda Moses Pétur Helgi Einarsson Kayla Jackson Laura Luebbert A Sina Booeshaghi | 2023/1/1 |
Cell-specific occupancy dynamics between the pioneer-like factor Opa/ZIC and Ocelliless/OTX regulate early head development in embryos | Frontiers in Cell and Developmental Biology | Kelli D Fenelon Fan Gao Priyanshi Borad Shiva Abbasi Lior Pachter | 2023/3/27 |
