Knut Reinert
Freie Universität Berlin
H-index: 54
Europe-Germany
Top articles of Knut Reinert
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Optimizing Job/Task Granularity for Metagenomic Workflows in Heterogeneous Cluster Infrastructures | Somayeh Mohammadi Latif PourKarimi Manuel Zschäbitz Tristan Aretz Ninon De Mecquenem | 2024 | |
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences | Bioinformatics | Hannes Hauswedell Sara Hetzel Simon G Gottlieb Helene Kretzmer Alexander Meissner | 2024/3/1 |
A simple refined DNA minimizer operator enables 2-fold faster computation | Bioinformatics | Chenxu Pan Knut Reinert | 2024/2/1 |
Fiora: Local neighborhood-based prediction of compound mass spectra from single fragmentation events | bioRxiv | Yannek Nowatzky Francesco Russo Jan Lisec Alexander Kister Knut Reinert | 2024 |
ganon2: up-to-date and scalable metagenomics analysis | bioRxiv | Vitor C Piro Knut Reinert | 2023 |
Decoil: Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data | bioRxiv | Madalina Giurgiu Nadine Wittstruck Elias Rodriguez-Fos Rocio Chamorro Gonzalez Lotte Bruckner | 2023 |
A mathematical programming approach for resource allocation of data analysis workflows on heterogeneous clusters | The Journal of Supercomputing | Somayeh Mohammadi Latif PourKarimi Felix Droop Ninon De Mecquenem Ulf Leser | 2023/11 |
A multi-view latent variable model reveals cellular heterogeneity in complex tissues for paired multimodal single-cell data | Bioinformatics | Yuwei Wang Bin Lian Haohui Zhang Yuanke Zhong Jie He | 2023/1/1 |
Mistle: bringing spectral library predictions to metaproteomics with an efficient search index | Bioinformatics | Yannek Nowatzky Philipp Benner Knut Reinert Thilo Muth | 2023/6/1 |
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries | Genome Biology | Svenja Mehringer Enrico Seiler Felix Droop Mitra Darvish René Rahn | 2023/5/31 |
Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models | Briefings in Bioinformatics | Chenxu Pan René Rahn David Heller Knut Reinert | 2023/3 |
Co-design for energy efficient and fast genomic search: Interleaved bloom filter on fpga | Marius Knaust Enrico Seiler Knut Reinert Thomas Steinke | 2022/2/13 | |
LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences | BMC bioinformatics | Jörg Winkler Gianvito Urgese Elisa Ficarra Knut Reinert | 2022/1/6 |
Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments | Bioinformatics | Mitra Darvish Enrico Seiler Svenja Mehringer René Rahn Knut Reinert | 2022/9/1 |
Critical assessment of metagenome interpretation: the second round of challenges | Nature methods | Fernando Meyer Adrian Fritz Zhi-Luo Deng David Koslicki Till Robin Lesker | 2022/4 |
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences | Iscience | Enrico Seiler Svenja Mehringer Mitra Darvish Etienne Turc Knut Reinert | 2021/7/23 |
Profiling of sub-lethal in vitro effects of multi-walled carbon nanotubes reveals changes in chemokines and chemokine receptors | Nanomaterials | Sandeep Keshavan Fernando Torres Andón Audrey Gallud Wei Chen Knut Reinert | 2021/3/30 |
Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures | BMC genomics | Kerstin Neubert Eric Zuchantke Robert Maximilian Leidenfrost Röbbe Wünschiers Josephine Grützke | 2021/12 |
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research | Franziska Hufsky Kevin Lamkiewicz Alexandre Almeida Abdel Aouacheria Cecilia Arighi | 2021/3 | |
The collaborative research center fonda | Ulf Leser Marcus Hilbrich Claudia Draxl Peter Eisert Lars Grunske | 2021/11 |
Co-Authors
