Kishwar Shafin
University of California, Santa Cruz
H-index: 16
North America-United States
Top articles of Kishwar Shafin
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads | medRxiv | Ayse Keskus Asher Bryant Tanveer Ahmad Byunggil Yoo Sergey Aganezov | 2024 |
Accurate human genome analysis with Element Avidity sequencing | bioRxiv | Andrew Carroll Alexey Kolesnikov Daniel E Cook Lucas Brambrink Kelly N Wiseman | 2023 |
Local read haplotagging enables accurate long-read small variant calling | bioRxiv | Alexey Kolesnikov Daniel Cook Maria Nattestad Brandy McNulty John Gorzynski | 2023/9/12 |
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome | Cell Reports Methods | HoJoon Lee Stephanie U Greer Dmitri S Pavlichin Bo Zhou Alexander E Urban | 2023/8/28 |
The complete sequence and comparative analysis of ape sex chromosomes | bioRxiv | Kateryna D Makova Brandon D Pickett Robert S Harris Gabrielle A Hartley Monika Cechova | 2023/12/1 |
A draft human pangenome reference | Nature | Wen-Wei Liao Mobin Asri Jana Ebler Daniel Doerr Marina Haukness | 2023/5/11 |
Small variant benchmark from a complete assembly of X and Y chromosomes | bioRxiv | Justin Wagner Nathan D Olson Jennifer McDaniel Lindsay Harris Brendan J Pinto | 2023/11/1 |
Gaps and complex structurally variant loci in phased genome assemblies | Genome research | David Porubsky Mitchell R Vollger William T Harvey Allison N Rozanski Peter Ebert | 2023/4/1 |
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation | Nature Methods | Mikhail Kolmogorov Kimberley J Billingsley Mira Mastoras Melissa Meredith Jean Monlong | 2023/10 |
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer | Nature Biotechnology | Gunjan Baid Daniel E Cook Kishwar Shafin Taedong Yun Felipe Llinares-López | 2023/2 |
The complete sequence of a human Y chromosome | Nature | Arang Rhie Sergey Nurk Monika Cechova Savannah J Hoyt Dylan J Taylor | 2023/9/14 |
Accurate Genome Analysis with Nanopore Sequencing Using Deep Neural Networks | Kishwar Shafin | 2022 | |
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation | Nature methods | Giulio Formenti Arang Rhie Brian P Walenz Françoise Thibaud-Nissen Kishwar Shafin | 2022/6 |
Complete genomic and epigenetic maps of human centromeres | Science | Nicolas Altemose Glennis A Logsdon Andrey V Bzikadze Pragya Sidhwani Sasha A Langley | 2022/4/1 |
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies | Nature methods | Ann M Mc Cartney Kishwar Shafin Michael Alonge Andrey V Bzikadze Giulio Formenti | 2022/6 |
A complete reference genome improves analysis of human genetic variation | Science | Sergey Aganezov Stephanie M Yan Daniela C Soto Melanie Kirsche Samantha Zarate | 2022/4/1 |
Best: A Tool for Characterizing Sequencing Errors | bioRxiv | Daniel Liu Anastasiya Belyaeva Kishwar Shafin Pi-Chuan Chang Andrew Carroll | 2022/1/1 |
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions | Cell genomics | Nathan D Olson Justin Wagner Jennifer McDaniel Sarah H Stephens Samuel T Westreich | 2022/5/11 |
The complete sequence of a human genome | Science | Sergey Nurk Sergey Koren Arang Rhie Mikko Rautiainen Andrey V Bzikadze | 2022/4/1 |
Knowledge distillation for fast and accurate DNA sequence correction | arXiv preprint arXiv:2211.09862 | Anastasiya Belyaeva Joel Shor Daniel E Cook Kishwar Shafin Daniel Liu | 2022/11/17 |
Co-Authors
