Katharina Hoff

About Katharina Hoff

Katharina Hoff, With an exceptional h-index of 20 and a recent h-index of 19 (since 2020), a distinguished researcher at Ernst-Moritz-Arndt-Universität Greifswald, specializes in the field of Bioinformatics, Gene Prediction, Metagenomics, Genome Annotation.

His recent articles reflect a diverse array of research interests and contributions to the field:

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria

Reduced interleukin-18 secretion by human monocytic cells in response to infections with hyper-virulent Streptococcus pyogenes

A reference genome for ecological restoration of the sunflower sea star, Pycnopodia helianthoides

Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to BRAKER, Galba, and TSEBRA

Galba: genome annotation with miniprot and AUGUSTUS

BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395

The BRAKER3 genome annotation pipeline

Katharina Hoff Information

University

Position

___

Citations(all)

5607

Citations(since 2020)

3769

Cited By

3070

hIndex(all)

20

hIndex(since 2020)

19

i10Index(all)

27

i10Index(since 2020)

27

Email

University Profile Page

Ernst-Moritz-Arndt-Universität Greifswald

Google Scholar

View Google Scholar Profile

Katharina Hoff Skills & Research Interests

Bioinformatics

Gene Prediction

Metagenomics

Genome Annotation

Top articles of Katharina Hoff

Title

Journal

Author(s)

Publication Date

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria

FEMS Microbiology Ecology

R. Siebers

D. Schultz

M. S. Farza

A. Brauer

D. Zühlke

...

2024/3/15

Reduced interleukin-18 secretion by human monocytic cells in response to infections with hyper-virulent Streptococcus pyogenes

Journal of Biomedical Science

Lea A Tölken

Antje D Paulikat

Lana H Jachmann

Alexander Reder

Manuela Gesell Salazar

...

2024/2/27

A reference genome for ecological restoration of the sunflower sea star, Pycnopodia helianthoides

Journal of Heredity

Lauren M Schiebelhut

Melissa B DeBiasse

Lars Gabriel

Katharina J Hoff

Michael N Dawson

2024/1/1

Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to BRAKER, Galba, and TSEBRA

arXiv preprint arXiv:2403.19416

Tomáš Brůna

Lars Gabriel

Katharina J Hoff

2024/3/28

Galba: genome annotation with miniprot and AUGUSTUS

BMC bioinformatics

Tomáš Brůna

Heng Li

Joseph Guhlin

Daniel Honsel

Steffen Herbold

...

2023/8/31

BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

Biorxiv

Lars Gabriel

Tomáš Brůna

Katharina J Hoff

Matthis Ebel

Alexandre Lomsadze

...

2023/6/12

Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395

Genome Medicine

Elvira R Shaidullina

Michael Schwabe

Thomas Rohde

Valeria V Shapovalova

Marina S Dyachkova

...

2023/2/13

The BRAKER3 genome annotation pipeline

Plant and Animal Genomes Conference

Lars Gabriel

Katharina J Hoff

Tomáš Bruna

Alexandre Lomsadze

Mark Borodovsky

...

2023/1/15

Two novel genomes of fireflies with different degrees of sexual dimorphism reveal insights into sex-biased gene expression and dosage compensation

Ana Catalan

Daniel Gygax

Leticia Rodriguez-Montes

Tjorven Hinzke

Katharina Hoff

...

2023/12/21

Neutrophil-derived reactive agents induce a transient SpeB negative phenotype in Streptococcus pyogenes

Journal of Biomedical Science

P Shumba

T Sura

K Moll

B Chakrakodi

LA Tölken

...

2023

The structure of the tetraploid sour cherry ‘Schattenmorelle’ (Prunus cerasus L.) genome reveals insights into its segmental allopolyploid nature

Frontiers in Plant Science

Thomas W Woehner

Ofere F Emeriewen

Alexander HJ Wittenberg

Koen Nijbroek

Rui P Wang

...

2023/12/1

The slow evolving genome of the xenacoelomorph worm Xenoturbella bocki

bioRxiv

Philipp H Schiffer

Paschalis Natsidis

Daniel J Leite

Helen E Robertson

François Lapraz

...

2022/6/27

Sulfate reducing bacteria are active and co-occur with diatoms during a spring phytoplankton bloom

R Siebers

D Schultz

MS Farza

A Brauer

D Zühlke

...

2022/5/31

Standards recommendations for the Earth BioGenome Project

Proceedings of the National Academy of Sciences

Mara KN Lawniczak

Richard Durbin

Paul Flicek

Kerstin Lindblad-Toh

Xiaofeng Wei

...

2022/1/25

TSEBRA: Transcript Selector for BRAKER

Bmc Bioinformatics

Lars Gabriel

Katharina J Hoff

Tomáš Brůna

Mark Borodovsky

Mario Stanke

2021/12

Rapid ecological and evolutionary divergence during a poleward range expansion

bioRxiv

Monica M Sheffer

Linda Zander

Brian Schulze

Pierick Mouginot

Thomas Naef

...

2021/11/4

A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum

Molecular Plant Pathology

Rebekka Harting

Jessica Starke

Harald Kusch

Stefanie Pöggeler

Isabel Maurus

...

2021/8

The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads

Genomics

Thomas W Wöhner

Ofere F Emeriewen

Alexander HJ Wittenberg

Harrie Schneiders

Ilse Vrijenhoek

...

2021/11

Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation

GigaScience

Monica M Sheffer

Anica Hoppe

Henrik Krehenwinkel

Gabriele Uhl

Andreas W Kuss

...

2021/1

The genomic basis of evolutionary differentiation among honey bees

Genome research

Bertrand Fouks

Philipp Brand

Hung N Nguyen

Jacob Herman

Francisco Camara

...

2021/7/1

See List of Professors in Katharina Hoff University(Ernst-Moritz-Arndt-Universität Greifswald)

Co-Authors

H-index: 99
Hervé Philippe

Hervé Philippe

Université de Montréal

H-index: 80
Rolf Daniel

Rolf Daniel

Georg-August-Universität Göttingen

H-index: 72
Braus, Gerhard

Braus, Gerhard

Georg-August-Universität Göttingen

H-index: 56
Mark Borodovsky

Mark Borodovsky

Georgia Institute of Technology

H-index: 52
Mario Stanke

Mario Stanke

Ernst-Moritz-Arndt-Universität Greifswald

H-index: 49
Telford MJ

Telford MJ

University College London

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