Karsten Hokamp

Karsten Hokamp

Trinity College

H-index: 41

North America-United States

About Karsten Hokamp

Karsten Hokamp, With an exceptional h-index of 41 and a recent h-index of 27 (since 2020), a distinguished researcher at Trinity College, specializes in the field of Bioinformatics, Functional Genomics, Molecular Evolution, Transcriptomics.

His recent articles reflect a diverse array of research interests and contributions to the field:

The influence of flocculation upon global gene transcription in a yeast CYC8 mutant

Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer …

Salmonella enterica serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage

BOSC 2023, the 24th annual Bioinformatics Open Source Conference

Targeting the NLRP3 inflammasome reduces inflammation in hidradenitis suppurativa skin

Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the …

Plasminogen activator inhibitor 1 is associated with high-grade serous ovarian cancer metastasis and is reduced in patients who have received neoadjuvant chemotherapy

Mechanically activated mesenchymal-derived bone cells drive vessel formation via an extracellular vesicle mediated mechanism

Karsten Hokamp Information

University

Position

Bioinformatics Research Officer Smurfit Institute of Genetics

Citations(all)

38148

Citations(since 2020)

8597

Cited By

32487

hIndex(all)

41

hIndex(since 2020)

27

i10Index(all)

69

i10Index(since 2020)

54

Email

University Profile Page

Trinity College

Google Scholar

View Google Scholar Profile

Karsten Hokamp Skills & Research Interests

Bioinformatics

Functional Genomics

Molecular Evolution

Transcriptomics

Top articles of Karsten Hokamp

Title

Journal

Author(s)

Publication Date

The influence of flocculation upon global gene transcription in a yeast CYC8 mutant

Microbial Genomics

Brenda Lee

Karsten Hokamp

Mohamed M Alhussain

Atif A Bamagoos

Alastair B Fleming

2024/3/26

Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer …

bioRxiv

Fergal J Hamrock

Daniel Ryan

Ali Shaibah

Anna S Ershova

Aalap Mogre

...

2023

Salmonella enterica serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage

Microlife

Benjamin Kumwenda

Rocío Canals

Alexander V Predeus

Xiaojun Zhu

Carsten Kröger

...

2024

BOSC 2023, the 24th annual Bioinformatics Open Source Conference

F1000Research

Nomi L Harris

Christopher J Fields

Karsten Hokamp

Jérémy Just

Radhika Khetani

...

2023

Targeting the NLRP3 inflammasome reduces inflammation in hidradenitis suppurativa skin

British Journal of Dermatology

Barry Moran

Conor M Smith

Alexandra Zaborowski

Mark Ryan

Jozsef Karman

...

2023/10

Systematic analysis of tup1 and cyc8 mutants reveals distinct roles for TUP1 and CYC8 and offers new insight into the regulation of gene transcription by the …

PLoS Genetics

Brenda Lee

Michael Church

Karsten Hokamp

Mohamed M Alhussain

Atif A Bamagoos

...

2023/8/11

Plasminogen activator inhibitor 1 is associated with high-grade serous ovarian cancer metastasis and is reduced in patients who have received neoadjuvant chemotherapy

Frontiers in Cell and Developmental Biology

Tanya E Kelly

Cathy L Spillane

Mark P Ward

Karsten Hokamp

Yanmei Huang

...

2023

Mechanically activated mesenchymal-derived bone cells drive vessel formation via an extracellular vesicle mediated mechanism

Journal of tissue engineering

N Shen

M Maggio

I Woods

M C. Lowry

R Almasri

...

2023/8

Enhanced flavour profiles through radicicol induced genomic variation in the lager yeasts, Saccharomyces pastorianus

Yeast

Roberto de la Cerda Garcia‐Caro

Georgia Thompson

Penghan Zhang

Karsten Hokamp

Fiona Roche

...

2022/10

BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference

F1000Research

Nomi L Harris

Karsten Hokamp

Hervé Ménager

Monica Munoz-Torres

Deepak Unni

...

2022/9/12

Single-cell transcriptomic profiling of hyperproliferative keratinocytes in hidradenitis suppurativa

Conor M Smith

Barry Moran

Alexandra Zabarowski

Mark Ryan

Jozsef Karman

...

2022/9/1

Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation

PLoS genetics

Roberto de la Cerda Garcia-Caro

Karsten Hokamp

Fiona Roche

Georgia Thompson

Soukaina Timouma

...

2022/4/7

von Willebrand factor links primary hemostasis to innate immunity

Nature Communications

Clive Drakeford

Sonia Aguila

Fiona Roche

Karsten Hokamp

Judicael Fazavana

...

2022/11/3

Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

PLoS Pathogens

TuShun R Powers

Amanda L Haeberle

Alexander V Predeus

Disa L Hammarlöf

Jennifer A Cundiff

...

2021/8/30

The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity

Nucleic Acids Research

Claire Fergus

Mashael Al-qasem

Michelle Cotter

Ciara M. McDonnell

Emiliano Sorrentino

...

2021/5/21

Global Chromatin Changes Resulting from Single-Gene Inactivation—The Role of SMARCB1 in Malignant Rhabdoid Tumor

Cancers

Colin Kenny

Elaine O’Meara

Mevlüt Ulaş

Karsten Hokamp

Maureen J O’Sullivan

2021/5/23

CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages

Journal of Biological Chemistry

Ciara G Doran

Ryoichi Sugisawa

Michael Carty

Fiona Roche

Claire Fergus

...

2021/12/1

BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference

Nomi Harris

Peter Cock

Christopher Fields

Karsten Hokamp

Jessica Maia

...

2021

A population of proinflammatory T cells coexpresses αβ and γδ T cell receptors in mice and humans

Journal of Experimental Medicine

Sarah C Edwards

Caroline E Sutton

Kristin Ladell

Emma J Grant

James E McLaren

...

2020/2/27

The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)

F1000Research

Nomi L Harris

Peter JA Cock

Christopher J Fields

Karsten Hokamp

Jessica Maia

...

2020

See List of Professors in Karsten Hokamp University(Trinity College)

Co-Authors

H-index: 94
Lorne Babiuk

Lorne Babiuk

University of Alberta

H-index: 85
Kenneth H. Wolfe

Kenneth H. Wolfe

University College Dublin

H-index: 75
Fiona Brinkman

Fiona Brinkman

Simon Fraser University

H-index: 73
Jay Hinton

Jay Hinton

University of Liverpool

H-index: 64
Charles J Dorman

Charles J Dorman

Trinity College

H-index: 62
Stephen V. Gordon

Stephen V. Gordon

University College Dublin

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