Julien Gagneur
Technische Universität München
H-index: 46
Europe-Germany
Top articles of Julien Gagneur
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Cellular energy regulates mRNA degradation in a codon-specific manner | Molecular Systems Biology | Pedro Tomaz da Silva Yujie Zhang Evangelos Theodorakis Laura D Martens Vicente A Yépez | 2024/3/15 |
Modeling fragment counts improves single-cell ATAC-seq analysis | Nature Methods | Laura D Martens David S Fischer Vicente A Yépez Fabian J Theis Julien Gagneur | 2024/1 |
Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events | Scientific Reports | Elisabeth Esser Eva C Schulte Alexander Graf Alexander Karollus Nicholas H Smith | 2024/3/8 |
Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing | Nature Communications | Daniela Klaproth-Andrade Johannes Hingerl Yanik Bruns Nicholas H Smith Jakob Träuble | 2024/1/2 |
Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic … | GENOME BIOLOGY | Shantanu Jain Constantina Bakolitsa E Brenner Steven Predrag Radivojac John Moult | 2024 |
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods | Null Null Shantanu Jain Constantina Bakolitsa Steven E Brenner Predrag Radivojac | 2024 | |
FRASER: Find RAre Splicing Events in RNA-seq Data | Christian Mertes Ines Scheller Julien Gagneur | 2024/4/28 | |
Aberrant expression prediction across human tissues | bioRxiv | Florian Rupert Hölzlwimmer Jonas Lindner Nils Wagner Vicente Andrés Yépez Francesco Paolo Casale | 2023 |
W81. GENETICS MEETS TRANSCRIPTOMICS: EXPRESSION AND SPLICING OUTLIER ANALYSIS IN WHOLE TRANSCRIPTOMES OF INDIVIDUALS WITH SCHIZOPHRENIA | European Neuropsychopharmacology | Eva Schulte Vicente A Yepez Franziska Degenhardt Kristina Adorjan Monika Budde | 2023/10/1 |
Improved detection of aberrant splicing using the intron Jaccard index | medRxiv | Ines F Scheller Karoline Lutz Christian Mertes Vicente A Yépez Julien Gagneur | 2023/4/3 |
Integration of variant annotations using deep set networks boosts rare variant association genetics | bioRxiv | Brian Clarke Eva Holtkamp Hakime Öztürk Marcel Mück Magnus Wahlberg | 2023/7/13 |
Identifying dysregulated regions in amyotrophic lateral sclerosis through chromatin accessibility outliers | bioRxiv | Muhammed Hasan Celik Julien Gagneur Ryan G Lim Jie Wu Leslie M Thompson | 2023/8/27 |
Distinct genetic liability profiles define clinically relevant patient strata across common diseases | medRxiv | Lucia Trastulla Sylvain Moser Laura T Jiménez-Barrón Till FM Andlauer Moritz von Scheidt | 2023/5/11 |
A comprehensive atlas of the aging vertebrate brain reveals signatures of progressive proteostasis dysfunction | bioRxiv (p. 2023.07. 20.549210). doi | Domenico Di Fraia Antonio Marino Jae Ho Lee Erika Kelmer Sacramento Mario Baumgart | 2023 |
Improved detection of aberrant splicing with FRASER 2.0 and the intron Jaccard index | The American Journal of Human Genetics | Ines F Scheller Karoline Lutz Christian Mertes Vicente A Yépez Julien Gagneur | 2023/12/7 |
Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers | Genome Biology | Alexander Karollus Thomas Mauermeier Julien Gagneur | 2023/3/27 |
Aberrant splicing prediction across human tissues | Nature Genetics | Nils Wagner Muhammed H Çelik Florian R Hölzlwimmer Christian Mertes Holger Prokisch | 2023/5 |
Evaluation of input data modality choices on functional gene embeddings | NAR Genomics and Bioinformatics | Felix Brechtmann Thibault Bechtler Shubhankar Londhe Christian Mertes Julien Gagneur | 2023/12/1 |
Transmicron: accurate prediction of insertion probabilities improves detection of cancer driver genes from transposon mutagenesis screens | Nucleic Acids Research | Carl Bredthauer Anja Fischer Ata Jadid Ahari Xueqi Cao Julia Weber | 2023/2/28 |
Analysis of 3,760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes | medRxiv | Xueqi Cao Sandra Huber Ata Jadid Ahari Franziska R Traube Marc Seifert | 2023/8/13 |
