Jonathan Monk
University of California, San Diego
H-index: 32
North America-United States
Top articles of Jonathan Monk
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Predicting the primary infection source of Escherichia coli bacteremia using virulence-associated genes | European Journal of Clinical Microbiology & Infectious Diseases | Christian Schaadt Ilsby Frederik Boetius Hertz Henrik Westh Jonathan Monk Peder Worning | 2024/1/25 |
A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex | Microbial Genomics | Helena B Cooper Ben Vezina Jane Hawkey Virginie Passet Sebastián López-Fernández | 2024/2/20 |
Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant Candida albicans isolate causing cerebral abscess | Current Research in Microbial Sciences | Monika Kumaraswamy Alison Coady Richard Szubin Thomas CS Martin Bernhard Palsson | 2023/1/1 |
Metabolomic and exposomic biomarkers of risk of future neurodevelopmental delay in human milk | Pediatric research | Kefeng Li Kerri Bertrand Jane C Naviaux Jonathan M Monk Alan Wells | 2023/5 |
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks | Proceedings of the National Academy of Sciences | Edward Alexander Catoiu Patrick Phaneuf Jonathan Monk Bernhard O Palsson | 2023/4/11 |
Metabolic features of treatment-refractory major depressive disorder with suicidal ideation | Translational psychiatry | Lisa A Pan Jane C Naviaux Lin Wang Kefeng Li Jonathan M Monk | 2023/12/15 |
Historical biomonitoring of pollution trends in the North Pacific using archived samples from the Continuous Plankton Recorder Survey | Science of The Total Environment | Kefeng Li Jane C Naviaux Sai Sachin Lingampelly Lin Wang Jonathan M Monk | 2023/3/20 |
Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species | Nature Communications | Jason C Hyun Jonathan M Monk Richard Szubin Ying Hefner Bernhard O Palsson | 2023/11/24 |
Interpreting roles of mutations associated with the emergence of S. aureus USA300 strains using transcriptional regulatory network reconstruction | bioRxiv | Saugat Poudel Jason C Hyun Ying Hefner Jonathan Monk Victor Nizet | 2023 |
Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models | eLife | B Vezina SC Watts J Hawkey HB Cooper LM Judd | 2023/10/10 |
CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in Escherichia coli | bioRxiv | Irina A Rodionova HyunGyu Lim Dmitry A Rodionov Ying Hutchison Christopher Dalldorf | 2023 |
Rev1 deficiency induces a metabolic shift in MEFs that can be manipulated by the NAD+ precursor nicotinamide riboside | Heliyon | Sharath Anugula Zhiquan Li Yuan Li Alexander Hendriksen Peter Bjarn Christensen | 2023/6/1 |
Mathematical models to study the biology of pathogens and the infectious diseases they cause | Joao B Xavier Jonathan M Monk Saugat Poudel Charles J Norsigian Anand V Sastry | 2022/4/15 | |
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets | Synthetic and Systems Biotechnology | Omkar S Mohite Colton J Lloyd Jonathan M Monk Tilmann Weber Bernhard O Palsson | 2022/9/1 |
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917 | BMC bioinformatics | Max van ‘t Hof Omkar S Mohite Jonathan M Monk Tilmann Weber Bernhard O Palsson | 2022/12/30 |
Laboratory-acquired mutations fall outside the wild-type alleleome of Escherichia coli | bioRxiv | Edward Catoiu Patrick Phaneuf Jonathan Monk Bernhard O Palsson | 2022/4/6 |
Cerebrospinal fluid and plasma metabolomics of acute endurance exercise | The FASEB Journal | Kefeng Li Martin Schön Jane C Naviaux Jonathan M Monk Nikoleta Alchus‐Laiferová | 2022/7 |
Experimental evolution reveals unifying systems-level adaptations but diversity in driving genotypes | Msystems | Erol S Kavvas Christopher P Long Anand Sastry Saugat Poudel Maciek R Antoniewicz | 2022/12/20 |
Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity | BMC genomics | Jason C Hyun Jonathan M Monk Bernhard O Palsson | 2022/1/4 |
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli | Scientific Reports | Irina A Rodionova Ye Gao Jonathan Monk Ying Hefner Nicholas Wong | 2022/5/4 |
