Jonathan Livny

Jonathan Livny

Harvard University

H-index: 44

North America-United States

About Jonathan Livny

Jonathan Livny, With an exceptional h-index of 44 and a recent h-index of 31 (since 2020), a distinguished researcher at Harvard University, specializes in the field of Computational biology, transcriptomics, infectious disease, RNA-Seq.

His recent articles reflect a diverse array of research interests and contributions to the field:

Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway

Perturbation-Specific Transcriptional Mapping facilitates unbiased target elucidation of antibiotics

985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

High-throughput neutralization and serology assays reveal correlated but highly variable humoral immune responses in a large population of individuals infected with SARS-CoV-2 …

Ribosomal ribonucleic acid hybridization for organism identification

Functional analyses and single cell immunoprofiling uncover sex-specific differences in SARS-CoV2 immune memory development

Jonathan Livny Information

University

Position

Senior Research Scientist, Broad Institute of MIT and Harvard

Citations(all)

9776

Citations(since 2020)

6280

Cited By

5693

hIndex(all)

44

hIndex(since 2020)

31

i10Index(all)

61

i10Index(since 2020)

54

Email

University Profile Page

Harvard University

Google Scholar

View Google Scholar Profile

Jonathan Livny Skills & Research Interests

Computational biology

transcriptomics

infectious disease

RNA-Seq

Top articles of Jonathan Livny

Title

Journal

Author(s)

Publication Date

Persistent Salmonella infections in humans are associated with mutations in the BarA/SirA regulatory pathway

Cell Host & Microbe

Alexandra Grote

Bar Piscon

Abigail L Manson

Boaz Adani

Helit Cohen

...

2024/1/10

Perturbation-Specific Transcriptional Mapping facilitates unbiased target elucidation of antibiotics

bioRxiv

Keith P Romano

Josephine Bagnall

Thulasi Warrier

Jaryd Sullivan

Kristina Ferrara

...

2024

985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance

Open Forum Infectious Diseases

Katelyn S Messer

Gordon Adams

Jillian S Paull

Jonathan Livny

Jacob Lemieux

...

2023/12

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

Microbiology Resource Announcements

Terrance Shea

Jason T Mohabir

Tania Kurbessoian

Brittany Berdy

James Fontaine

...

2023/7/18

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome

Nature microbiology

Seongmi K Russell

Jessica K Harrison

Benjamin S Olson

Hyung Joo Lee

Valerie P O’Brien

...

2023/5

High-throughput neutralization and serology assays reveal correlated but highly variable humoral immune responses in a large population of individuals infected with SARS-CoV-2 …

Mbio

Shuting Zhang

Peijun Ma

Marek Orzechowski

Allison Lemmer

Kara Rzasa

...

2023/4/25

Ribosomal ribonucleic acid hybridization for organism identification

2022/9/13

Functional analyses and single cell immunoprofiling uncover sex-specific differences in SARS-CoV2 immune memory development

Research Square

Basak Eraslan

Eric Brown

Maura Benson

Liat Amir-Zilberstein

Sung-Moo Park

...

2022/3/15

Multiplexed detection of bacterial nucleic acids using Cas13 in droplet microarrays

PNAS nexus

Sri Gowtham Thakku

Cheri M Ackerman

Cameron Myhrvold

Roby P Bhattacharyya

Jonathan Livny

...

2022/3

At-home testing and risk factors for acquisition of SARS-CoV-2 infection in a major US Metropolitan area

Open Forum Infectious Diseases

Ann E Woolley

Scott Dryden-Peterson

Andy Kim

Sarah Naz-McLean

Christina Kelly

...

2022/11/1

SARS-CoV-2 Antibody persistence in COVID-19 convalescent plasma donors

MedRxiv

Clara Di Germanio

Graham Simmons

Kathleen Kelly

Rachel Martinelli

Orsolya Darst

...

2021/3/26

Bacterial infection drives trained immunity through epigenetic remodeling of epithelial stem cells

Scott Hultgren

Seongmi Russell

Hyung Joo Lee

Benjamin Olson

Jonathan Livny

...

2021/9/9

SARS‐CoV‐2 antibody persistence in COVID‐19 convalescent plasma donors: dependency on assay format and applicability to serosurveillance

Transfusion

Clara Di Germanio

Graham Simmons

Kathleen Kelly

Rachel Martinelli

Orsolya Darst

...

2021/9

COMPOSITIONS AND METHODS FOR DETECTING ANTIBIOTIC RESPONSIVE mRNA EXPRESSION SIGNATURES AND USES THEREOF

2021/7/29

The cvn8 Conservon System Is a Global Regulator of Specialized Metabolism in Streptomyces coelicolor during Interspecies Interactions

Msystems

Bailey Bonet

Yein Ra

Luis M Cantu Morin

Javier Soto Bustos

Jonathan Livny

...

2021/10/26

Best practices on the differential expression analysis of multi-species RNA-seq

Matthew Chung

Vincent M Bruno

David A Rasko

Christina A Cuomo

José F Muñoz

...

2021/4/29

Thecvn8Conservon System Is a Global Regulator of Specialized Metabolism in Streptomyces coelicolor during Interspecies Interactions

Bailey Bonet

Yein Ra

Luis M Cantu Morin

Javier Soto Bustos

Jonathan Livny

...

2021

Genetic determinants facilitating the evolution of resistance to carbapenem antibiotics

Elife

Peijun Ma

Lorrie L He

Alejandro Pironti

Hannah H Laibinis

Christoph M Ernst

...

2021/4/19

Wisdom of the crowds: A suggested polygenic plan for small-RNA-mediated regulation in bacteria

IScience

Omer Goldberger

Jonathan Livny

Roby Bhattacharyya

Orna Amster-Choder

2021/10/22

Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis

Nucleic Acids Research

Nadav Ben-Assa

Michael J Coyne

Alexey Fomenkov

Jonathan Livny

William P Robins

...

2020/11/4

See List of Professors in Jonathan Livny University(Harvard University)

Co-Authors

H-index: 138
Michael S. Lawrence

Michael S. Lawrence

Harvard University

H-index: 43
Doyle Ward

Doyle Ward

University of Massachusetts Medical School

H-index: 28
Roby Bhattacharyya

Roby Bhattacharyya

Harvard University

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