John H Gennari
University of Washington
H-index: 41
North America-United States
Top articles of John H Gennari
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
The Ontology of Physics for Biology: Semantic Modeling of Multiscale, Multidomain Physiological Systems | Daniel L Cook John H Gennari Maxwell L Neal | 2023/12/14 | |
VSCode-Antimony: a source editor for building, analyzing, and translating antimony models | Bioinformatics | Steve Ma Longxuan Fan Sai Anish Konanki Eva Liu John H Gennari | 2023/12/1 |
An automated model annotation system (AMAS) for SBML models | Bioinformatics | Woosub Shin John H Gennari Joseph L Hellerstein Herbert M Sauro | 2023/11/1 |
BioSimulators: a central registry of simulation engines and services for recommending specific tools | Nucleic acids research | Bilal Shaikh Lucian P Smith Dan Vasilescu Gnaneswara Marupilla Michael Wilson | 2022/7/5 |
NLIMED: Natural Language Interface for model entity discovery in biosimulation model repositories | Frontiers in Physiology | Yuda Munarko Dewan M Sarwar Anand Rampadarath Koray Atalag John H Gennari | 2022/2/24 |
Understanding the differences in cognitively defined subgroups in Alzheimer's disease | Harkirat Kaur Sohi John H Gennari Paul K Crane Ellen M Wijsman | 2022 | |
SBMate: A Framework for Evaluating Quality of Annotations in Systems Biology Models | bioRxiv | Woosub Shin Joseph L Hellerstein Yuda Munarko Maxwell L Neal David P Nickerson | 2021/10/9 |
Practical resources for enhancing the reproducibility of mechanistic modeling in systems biology | Michael L Blinov John H Gennari Jonathan R Karr Ion I Moraru David P Nickerson | 2021/9/1 | |
libOmexMeta: enabling semantic annotation of models to support FAIR principles | Bioinformatics | Ciaran Welsh David P Nickerson Anand Rampadarath Maxwell L Neal Herbert M Sauro | 2021/12/15 |
OMEX metadata specification (version 1.2) | Journal of integrative bioinformatics | DP Nickerson D Waltemath JH Gennari M König G Misirli | 2021/10/20 |
Everyone’s Variant Annotation Tool: EVAT | Yiliang Ma | 2020 | |
Open modeling and exchange (OMEX) metadata specification version 1.0 | Journal of integrative bioinformatics | Maxwell L Neal John H Gennari Dagmar Waltemath David P Nickerson Matthias König | 2020/8/24 |
Deep phenotyping of cardiac function in heart transplant patients using cardiovascular system models | The Journal of Physiology | Amanda L Colunga Karam G Kim N Payton Woodall Todd F Dardas John H Gennari | 2020/8 |
OMEX Metadata Specification version 1.0 | Maxwell Neal John Gennari Dagmar Waltemath David Nickerson Matthias König | 2020/4/15 |
