John A Lees
Imperial College London
H-index: 34
Europe-United Kingdom
Top articles of John A Lees
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
CELEBRIMBOR: Pangenomes from metagenomes | bioRxiv | Joel Hellewell Samuel T Horsfield Johanna von Wachsmann Tatiana Gurbich Robert D Finn | 2024 |
Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA) | bioRxiv | Romain Derelle Johanna von Wachsmann Tommi Maeklin Joel Hellewell Timothy Russell | 2024 |
AllTheBacteria-all bacterial genomes assembled, available and searchable | bioRxiv | Martin Hunt Leandro Lima Wei Shen John Lees Zamin Iqbal | 2024 |
Graph-based Nanopore Adaptive Sampling with GNASTy enables sensitive pneumococcal serotyping in complex samples | bioRxiv | Samuel T Horsfield Basil Fok Yuhan Fu Paul Turner John A Lees | 2024 |
Optimising machine learning prediction of minimum inhibitory concentrations in Klebsiella pneumoniae | Microbial Genomics | Gherard Batisti Biffignandi Leonid Chindelevitch Marta Corbella Edward J Feil Davide Sassera | 2024/3/26 |
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis | Nature Communications | Ouli Xie Jacqueline M Morris Andrew J Hayes Rebecca J Towers Magnus G Jespersen | 2024/3/13 |
Quantifying the common genetic variability of bacterial traits | arXiv preprint arXiv:2302.11378 | T Tien Mai Gerry Tonkin-Hill John A Lees Jukka Corander | 2023/2/22 |
Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia | Nature Communications | Lloyd AC Chapman Maite Aubry Noemie Maset Timothy W Russell Edward S Knock | 2023/11/13 |
Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis | Journal of Clinical Microbiology | Akuzike Kalizang’oma Brenda Kwambana-Adams Jia Mun Chan Aishwarya Viswanath Andrea Gori | 2023/1/26 |
fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing | Bioinformatics | Romain Derelle John Lees Jody Phelan Ajit Lalvani Nimalan Arinaminpathy | 2023/11/1 |
BlpC-mediated selfish program leads to rapid loss of Streptococcus pneumoniae clonal diversity during infection | Cell Host and Microbe | Surya D Aggarwal John A Lees Nathan T Jacobs Gavyn Chern Wei Bee Annie R Abruzzo | 2023/1/11 |
Accurate and fast graph-based pangenome annotation and clustering with ggCaller | Genome Research | Samuel T Horsfield Gerry Tonkin-Hill Nicholas J Croucher John A Lees | 2023/9/1 |
PAN-GWES: Pangenome-spanning epistasis and co-selection analysis via de Bruijn graphs | bioRxiv | Juri Kuronen Samuel Horsfield Anna K Pontinen Sergio Arredondo-Alonso Harry Thorpe | 2023 |
Genealogical inference and more flexible sequence clustering using iterative-PopPUNK | Genome Research | Bin Zhao John A Lees Hongjin Wu Chao Yang Daniel Falush | 2023/6/1 |
Inferring the heritability of bacterial traits in the era of machine learning | T Tien Mai John A Lees Rebecca A Gladstone Jukka Corander | 2023/1/1 | |
Dissemination of carbapenemase-producing Enterobacterales in Ireland from 2012 to 2017: a retrospective genomic surveillance study | Microbial Genomics | Nazreen F Hadjirin Andries J van Tonder Beth Blane John A Lees Narender Kumar | 2023/3/14 |
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications | Microbial Genomics | Ruth E Timme Ilene Karsch-Mizrachi Zahra Waheed Masanori Arita Duncan MacCannell | 2023/12/12 |
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation | Philosophical Transactions of the Royal Society B | John A Lees Gerry Tonkin-Hill Zhirong Yang Jukka Corander | 2022/10/10 |
Pneumococcal genetic variability in age-dependent bacterial carriage | Elife | Philip HC Kremer Bart Ferwerda Hester J Bootsma Nienke Y Rots Alienke J Wijmenga-Monsuur | 2022/7/26 |
Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study | The Lancet Microbe | Rama Kandasamy Stephanie Lo Meeru Gurung Michael J Carter Rebecca Gladstone | 2022/7/1 |
