Jian Ma
Carnegie Mellon University
H-index: 51
North America-United States
Top articles of Jian Ma
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
scGHOST: Identifying single-cell 3D genome subcompartments | Nature Methods | Kyle Xiong Ruochi Zhang Jian Ma | 2024/4/8 |
Computational methods for analysing multiscale 3D genome organization | Yang Zhang Lorenzo Boninsegna Muyu Yang Tom Misteli Frank Alber | 2024/2 | |
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data | arXiv preprint arXiv:2401.13022 | Nikki Bialy Frank Alber Brenda Andrews Michael Angelo Brian Beliveau | 2024/1/23 |
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function | bioRxiv | Omid Gholamalamdari Tom van Schaik Yuchuan Wang Pradeep Kumar Liguo Zhang | 2024 |
The Impact of Genomic Variation on Function (IGVF) Consortium | arXiv preprint arXiv:2307.13708 | IGVF Consortium | 2023/7/24 |
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells | Nature Communications | Riccardo Calandrelli Xingzhao Wen John Lalith Charles Richard Zhifei Luo Tri C Nguyen | 2023/10/16 |
Advances and Perspectives for the Human BioMolecular Atlas Program (HuBMAP) | Nature Cell Biology | Sanjay Jain Liming Pei Jeffrey M Spraggins Michael Angelo James P Carson | 2023/7/19 |
PhyGCN: Pre-trained Hypergraph Convolutional Neural Networks with Self-supervised Learning | bioRxiv | Yihe Deng Ruochi Zhang Pan Xu Jian Ma Quanquan Gu | 2023/10/2 |
UNADON: transformer-based model to predict genome-wide chromosome spatial position | Bioinformatics | Muyu Yang Jian Ma | 2023/6/1 |
Current and future directions in network biology | arXiv preprint arXiv:2309.08478 | Marinka Zitnik Michelle M Li Aydin Wells Kimberly Glass Deisy Morselli Gysi | 2023/9/15 |
Compartmentalization with nuclear landmarks yields random, yet precise, genome organization | Biophysical Journal | Kartik Kamat Zhuohan Lao Yifeng Qi Yuchuan Wang Jian Ma | 2023/4/4 |
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project | Job Dekker Frank Alber Sarah Aufmkolk Brian J Beliveau Benoit G Bruneau | 2023/8/3 | |
SpiceMix enables integrative single-cell spatial modeling of cell identity | Nature Genetics | Benjamin Chidester Tianming Zhou Shahul Alam Jian Ma | 2023/1/9 |
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells | bioRxiv | Tianming Zhou Ruochi Zhang Deyong Jia Raymond T Doty Adam D Munday | 2023/7/25 |
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types | bioRxiv | Pradeep Kumar Omid Gholamalamdari Yang Zhang Liguo Zhang Anastassiia Vertii | 2023 |
Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome | Nature methods | Xiaopeng Zhu Yang Zhang Yuchuan Wang Dechao Tian Andrew S Belmont | 2022/8 |
NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health | Brown University TDA Wang Siyuan (Steven) 34 Columbia TMC Bonneau Richard 39 40 Christiano Angela 41 Izar Benjamin 42 Menon Vilas 43 Owens David M. 44 Phatnani Hemali 43 Smith Colin 45 Suh Yousin 41 Teich Andrew F. 43 Duke University TMC Bekker Valerie 1 Chan Cliburn 32 Coutavas Elias 1 Hartwig Matthew G. 46 Ji Zhicheng 32 Nixon Andrew B. 19 Massachusetts General Hospital TDA Dou Zhixun 47 Rajagopal Jayaraj 47 Slavov Nikolai 48 Mayo Clinic TDA Holmes David III 13 Jurk Diana 13 Kirkland James L. 49 Lagnado Anthony 13 Tchkonia Tamara 13 | 2022/12 | |
Guest Editorial for Selected Papers From ACM-BCB 2019 | IEEE/ACM Transactions on Computational Biology and Bioinformatics | Jian Ma | 2022/7/1 |
Best Practices for Interpretable Machine Learning in Computational Biology | Biorxiv | Valerie Chen Muyu Yang Wenbo Cui Joon Sik Kim Ameet Talwalkar | 2022/11/1 |
Feeding activates FGF15‐SHP‐TFEB‐mediated lipophagy in the gut | The EMBO Journal | Sunmi Seok Young‐Chae Kim Yang Zhang Bo Kong Grace Guo | 2022/9/1 |
